| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3511 |
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| Symbol | |
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| ID | 4029442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3863619 |
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| End bp | 3865964 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637971923 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_578700 |
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| Protein GI | 92118971 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGCAT ACCCGATGCA ATTGGCCGAT CACCATCGCC ACACGGATCA TACGATGTCG
CCAGCGATAT ATGCGGCGCT CGTGGGTTCG CTATTCCAGA ATCCGGCGCC GATGTTCGCC
GGCGCGGTTT GTGCGGCGAT TGCCGCCGTC ATGACCGCGT TGAAGACCGG CAATCATCTG
CTGTGGCCGT GCGCGGTGCT TCTGGTCATG ATCGGCGCGC TCCGCAGCTT CGACATGGCG
AAATACAAGA GCCGCGGTTC GGACCTGACC GTGGCCGAGG CAGCGCGCTG GGAGACCCGG
TATCAGATCG GAGCGGTGCT CTACGCGATT GTGCTCGGCG CATGGTGCGC CATCGCGCTT
CTGATGACCG ACGATGCGGT CGCGCATATG ATCTGTATCT CGGTCACCAC GGGATACGTG
GCGGCTGGCG CCGGCCGCGC TTATGGGCGC CCGTGGATTT TCCACGTGCA AATTCTGCTG
ACCTGCGGAC CGATGGCGGG GGCGATGGTG CTGCACGGCA ACCCCTACTA CGTGGGGATG
GCGCTTCTCA CCGTGCTGTA TTTCCTCGGC CTCGAGAGGA TCACGACGAG ACTGCAGGAG
ATTTTCGTTC GCGCTCTGAT CGCACGGGAA CGCGAAGCGG CCATAGCCGG CCAGTTCGAC
ACCGCGCTGA ACAACATGCC CCATGGCCTG TGCATGTTCG GCGCCGATGG CCGCCTGGGC
GTGATGAACT ATCGCTTCGG CGAAATGATG CATCTCGCCG ACAGCTTCGT GCATCGCCGC
GTTGGTGCGG CGGATGTCAT CGCGGCATGC GTGGCGGTAG GAACGATGTC ACCCGAAAAC
GGAAGCACGA TTATCTCGGA GATCGAGAAT TCACAGGCCG GCGCAATCGT GACCGCCGAC
TTGGATAGGG AACGCGGTCG GGCGCTGTCG TGGACGTTCC AGCCAATGGT CGGCGGAGGC
ACGGTCGTTC TCGTCGAGGA CATCACGGAG CGGCGCAAGG CGGAAGCCAA AATCAGCCAT
CTCGCCCGCT TCGATTCGCT GACGGAACTG CCCAACAGGC TCAGCTTTCG CGACGAAATC
GAACGCCTGC TGGCGATCGC AAACAGCGAG TCGCGGTTGT CGGCGCTGCT GTTCATCGAT
CTCGATCAAT TCAAGCAGAT CAACGATACG CTCGGCCATC CCTGCGGCGA TCGCCTGTTA
TGCATTGTCG CCGACCGGCT CCGCGGAATG CTGCGCCCGG ACGATTTCGT CGCGCGATTC
GGCGGCGACG AATTCGTCGT GTTCCAGCAA AACATTCAGT CGGCGGAGGA GGCGGCGGCG
CTGTCCCGCC GCGTCGTCGA ACGGCTCACC GAGCGATACG AGATCGATCG CCACCTGGTC
GAGATCGGCG CCAGCATCGG TATCGCGCTG ACATCGCCCG GCGTCACGGC CGACAACCTT
CTCAAGCAGG CCGACATGGC GCTCTATCGC GCCAAGGCGG GCGGCCGCGG AACCTTCTGC
TTCTTCCGTA ACGAGATGGC GGAAATCGTC GAAGCGCGCC GCGTCCTCGA ACTCGATCTG
CGCAAGGCGC TGGCCAAGGA AGAGTTCGAG CTGTTCTATC AACCGTTGGT CAATCTGAAA
TCGGGACGGA TCACCACTTG CGAGGCGCTG CTGCGCTGGA ATCATCCCAC GCGCGGAATG
GTGTCACCGA TCGATATCAT CCCGGTGGCG GAGGAGATCG GCCTGATCGT CGATCTCGGT
CGCTGGATTT TGCGCAAGGC CTGCATGGAA TGCATGACGT GGCCGGACGC TGTCAGCGTC
GCCGTTAATT TCTCGTCACA GCAGTTCCAC CAGCGCGATG TCCTGAGCGA AGTCCGTTAT
GCACTCGAGG TCTCCGGCCT TCCCGCGCAC CGCCTTGAAA TCGAAATCAC GGAATCGTCC
TTGCTGCGCA ACACCCAGTG GACGCACGAT GCGCTCACGC AGTTGCGCTC GGCGGGCGTG
AGGATTTCGC TCGACGATTT TGGTACCGGC TATTCGAGCC TCAGTTATCT GCACAATTTC
CCGCTTCAGA AAGTCAAGAT CGACCGCTCC TTCCTCGAGG GGATCGATGC AGACCGGCCG
CTGACGCTGC TGCGCGGGGT GGCGCGGCTG AGCGCCGATC TCGGCATGTC CGTCGTCGTC
GAAGGCATCG AAACCAACGA GCAGCTCGAA CTCATCAGTG CCGACGGCAC GGTGACGGAA
GCGCAGGGCT ATCTGTTCAG CCGGCCGGTG TCTGCGGCTC GCATCCGTCA ACTGCTGGAT
GCCTCCCATG GGCGCCATCT GCGTGACGAC AATGTGAAGG TCCTCCCGTC CCGGTCGATC
GCTTGA
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| Protein sequence | MRAYPMQLAD HHRHTDHTMS PAIYAALVGS LFQNPAPMFA GAVCAAIAAV MTALKTGNHL
LWPCAVLLVM IGALRSFDMA KYKSRGSDLT VAEAARWETR YQIGAVLYAI VLGAWCAIAL
LMTDDAVAHM ICISVTTGYV AAGAGRAYGR PWIFHVQILL TCGPMAGAMV LHGNPYYVGM
ALLTVLYFLG LERITTRLQE IFVRALIARE REAAIAGQFD TALNNMPHGL CMFGADGRLG
VMNYRFGEMM HLADSFVHRR VGAADVIAAC VAVGTMSPEN GSTIISEIEN SQAGAIVTAD
LDRERGRALS WTFQPMVGGG TVVLVEDITE RRKAEAKISH LARFDSLTEL PNRLSFRDEI
ERLLAIANSE SRLSALLFID LDQFKQINDT LGHPCGDRLL CIVADRLRGM LRPDDFVARF
GGDEFVVFQQ NIQSAEEAAA LSRRVVERLT ERYEIDRHLV EIGASIGIAL TSPGVTADNL
LKQADMALYR AKAGGRGTFC FFRNEMAEIV EARRVLELDL RKALAKEEFE LFYQPLVNLK
SGRITTCEAL LRWNHPTRGM VSPIDIIPVA EEIGLIVDLG RWILRKACME CMTWPDAVSV
AVNFSSQQFH QRDVLSEVRY ALEVSGLPAH RLEIEITESS LLRNTQWTHD ALTQLRSAGV
RISLDDFGTG YSSLSYLHNF PLQKVKIDRS FLEGIDADRP LTLLRGVARL SADLGMSVVV
EGIETNEQLE LISADGTVTE AQGYLFSRPV SAARIRQLLD ASHGRHLRDD NVKVLPSRSI
A
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