| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3503 |
|---|
| Symbol | |
|---|
| ID | 4029434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 3850507 |
|---|
| End bp | 3851817 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637971915 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_578692 |
|---|
| Protein GI | 92118963 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.993279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTGA TGGCCGAGCC GCCGTGTGCG TCGGCATCGG CAAATGGACG TTTTTCGATG
GCGACAACCG AAGAGAGCGT TCGGCGTCTC GGGCGCGAAG CGGGATGGCG CACGCCGCTG
GTGATCATCG TCTGCGGCTG CCTGATCGGG ATGCTGACGT TCGGGCCGCG TTCGGCCTTC
GGCTTTTTCA TGCAACCCAT GAGCAGCGAG TTTTCGTGGG GCCGCGACGT TTTCGCGCTG
GCTTTCGCGG TTCAGAATCT GCTGTGGGGA ATCGGCCAAC CCTTCGCCGG CGCGATTGCC
GACAGGTTCG GCAGCGTGCG CGTGATTTGC ATCGGCGCGT TGATGTATGC CGCCGGCCTG
TTGGTGATGC GCTATGCGGG CACGCCGTTG TCGCTCAATA TCGGCGCCGG ATTTTTGATC
GGTTTCGGCC TGTCCGGCTG TTCGTTCAAT CTGGTGCTGT CGGCGTTCGG CAAGCTGTTG
CCGGAGCAAT GGCGTGGCAT CGCGCTGGGC GCCGGCACCG CGGCGGGATC GTTCGGACAA
TTCGTGTTCG CGCCGTTCAG CGTTGCGCTG ATCGACAATT TCGGCTGGCA GCCGGCGCTG
ATCGTGTTTG CGGTGCTCAT GCTGTTTGTG GTGCCGTTTG CGCTCGTGTT GTCGACTCCG
CCAAGCGATA CCGGCAGTAC GGCTGCCGCC GCACCGGAAC AATCTTTCAA GAGCGCGCTG
GCGGAAGCCT TCGGCCACCG CTCCTATGTC CTGCTGGTGC TCGGCTTCTT CACCTGTGGA
TTCCAGCTCG CCTTCATCAC CGCGCACCTG CCGGCCTATC TGGTCGATCG CGGCCTGTCG
GTTCAGACCG GCGGATGGGT GCTGGCGGCG ATCGGCCTGT TCAACATCAT CGGCTCGCTG
AGCGTCGGAT GGCTCTCGAC CAGGATGCCC AAGCGCTACA TCCTGTCGGC AATCTACTTC
ATCCGCGCGC TGTCGATCGT GGTCTTCATT TCAACCCCGA TGACGACATT CTCCGCGGTC
GCGTTCGGCG TCGTCACCGG CCTGACCTGG CTGTCCACGG TGCCGCCAAC CACGAGTCTC
GTGGCGCTGA TGTTCGGCAC CCGCTGGCTC GCGACGCTCT ACGGCTTCGC GTTCTTCAGC
CATCAGGTCG GCGGGTTTCT CGGCTCGCTG CTGGGCGGCG TAGTGTTCGA CCATTTCGGT
TCCTACACCC CGGTCTGGTG GTTGTCGGTG CTGTTCGGCG TGCTGTCCGC ATTGATCAAT
CTGCCGATCG TCGAAGCCCC GGTCCGGCGG GCGGTTGCGC AGCCTGCATA A
|
|---|
| Protein sequence | MALMAEPPCA SASANGRFSM ATTEESVRRL GREAGWRTPL VIIVCGCLIG MLTFGPRSAF
GFFMQPMSSE FSWGRDVFAL AFAVQNLLWG IGQPFAGAIA DRFGSVRVIC IGALMYAAGL
LVMRYAGTPL SLNIGAGFLI GFGLSGCSFN LVLSAFGKLL PEQWRGIALG AGTAAGSFGQ
FVFAPFSVAL IDNFGWQPAL IVFAVLMLFV VPFALVLSTP PSDTGSTAAA APEQSFKSAL
AEAFGHRSYV LLVLGFFTCG FQLAFITAHL PAYLVDRGLS VQTGGWVLAA IGLFNIIGSL
SVGWLSTRMP KRYILSAIYF IRALSIVVFI STPMTTFSAV AFGVVTGLTW LSTVPPTTSL
VALMFGTRWL ATLYGFAFFS HQVGGFLGSL LGGVVFDHFG SYTPVWWLSV LFGVLSALIN
LPIVEAPVRR AVAQPA
|
|---|
| |