| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3411 |
|---|
| Symbol | |
|---|
| ID | 4033234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3754731 |
|---|
| End bp | 3756308 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637971822 |
|---|
| Product | FGGY-family pentulose kinase |
|---|
| Protein accession | YP_578601 |
|---|
| Protein GI | 92118872 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1069] Ribulose kinase |
|---|
| TIGRFAM ID | [TIGR01315] FGGY-family pentulose kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.110951 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGACC TCGTGATCGC AGTGGATGTC GGATCGAGCA GCGCACGCGC CGGCGTGTTC
GACAAGCGCG GTGTTCTGCT TGCGCGCGCC GAAGCTCCGT TCGCGACCGC ACACCCTGAA
CCCGGTCATG CCGAACACAG CTCGGATGAA ATCTGGACGG CGGTCTGCCA GGCTGTGCGC
GGAGCCATTA CGGCCGGACA CATCGCTGCC GAAGCGGTCA AGGGCATCGC CTTCGACGCC
ACCTGCTCGC TCGTCACCCT TGACCGCGCC GGCCGGCCGG TCACAGCCTC TCTGACCGGC
GAGGATCGCT GGAACGTGAT CATGTGGGCC GATCATCGGG CCACCGCGGA AGCCGACGAG
ATCACCGCCA CCCGCCATCG CGTGCTCGAT CACGTCGGCA ATGTGATGTC GCCGGAAATG
GAAATCCCGA AGCTGCTCTG GCTGAAGCGG CATTGCCCCG ATGCCTGGCA CCGCTACGGG
CTTATGCTCG ACCTCACCGA CTTCCTGACC TGGAAGGCGA CCGGCCGCGC CGCGGTCTCC
ACCTGCACGG TAACATGCAA ATGGACCTAT CTCGCCCACG AGAAGCCGGG TTGGCAAAGC
GATTTCCTGT CGCGCGTCGG GCTCGATGAT TTGCAGGATC GGGCATCGCT TCCCGCCTCG
ACATTGCCGA TCGGAACAAG CGCCGGCCCG CTGACTGCCG AAAGCGCCGG CCAGCTTGGC
CTGCCGCGCG ACTGCGTTGT CGGCGTCGGC GCGATCGATG CCCATGCCGG CGGCATCGGC
GTGCTCGGCG GGCTCGACGC AACCGGCCTC AACGAGACTC TCGCCATGAT CGCCGGCACC
TCCTCGTGTC ACATGGCGGC CTCGCCCGAC CCCAGGCAAA TTCCCGGCCT ATGGGGCCCC
TATTACGACG CGATGCTACC TGGCCACTGG CTGAACGAAG GCGGTCAATC GGCCACCGGC
TCGTTGCTCG ATCACATTCT CGACCTCCAC GCCGAGGGAC AATCGCTTGG CGCGGATCGG
CACGCGGTGA TCGCGGCGCG GATCGAGGCC GCGCTCGCCG CCGACGGATT CGCATTCGTC
GACGACCTGC ATGTGCTGCC GGACTTTCAC GGAAACCGCT CCCCGCTCGC CGATCCCGAT
TCGGTCGGCG TGATCCACGG GCTGCGTCTC GATGCCTCGG CCCATTCGCT GACCCGGCTT
TATTTCGCGA CCGCTGTGGG CATCGCGCTG GGAACGCGGC ACATCATCGA TGCGCTGAAC
GACGCCGGCT ACGCCATCGC GCATATCCGC TTGACCGGAG GCCATGCTGC GAGCCAGCTG
CTGGTCCAGC TCTACGCCGA CGCCACCGAT GTCGCGGTAT CGCTGCCCGA ACAACCCGAC
GGGGTGCTGC TGGGAACCGC ATGTGTCGCC GCCGCCGGCT GTGGGCTTTA TCCGTCGGTC
ACGGCGGCGG CTGCGGCGAT GACCCGGATC GGCCGAACCG TGCAGCCAGC CGCTGCGGCG
CGCGATTTTT TCGACCGGCG TTACCGCGCG TTTCTATTGA TGCACGAGCA TCGCCGGGCG
GTATCGCGGC TCGCTTGA
|
|---|
| Protein sequence | MPDLVIAVDV GSSSARAGVF DKRGVLLARA EAPFATAHPE PGHAEHSSDE IWTAVCQAVR
GAITAGHIAA EAVKGIAFDA TCSLVTLDRA GRPVTASLTG EDRWNVIMWA DHRATAEADE
ITATRHRVLD HVGNVMSPEM EIPKLLWLKR HCPDAWHRYG LMLDLTDFLT WKATGRAAVS
TCTVTCKWTY LAHEKPGWQS DFLSRVGLDD LQDRASLPAS TLPIGTSAGP LTAESAGQLG
LPRDCVVGVG AIDAHAGGIG VLGGLDATGL NETLAMIAGT SSCHMAASPD PRQIPGLWGP
YYDAMLPGHW LNEGGQSATG SLLDHILDLH AEGQSLGADR HAVIAARIEA ALAADGFAFV
DDLHVLPDFH GNRSPLADPD SVGVIHGLRL DASAHSLTRL YFATAVGIAL GTRHIIDALN
DAGYAIAHIR LTGGHAASQL LVQLYADATD VAVSLPEQPD GVLLGTACVA AAGCGLYPSV
TAAAAAMTRI GRTVQPAAAA RDFFDRRYRA FLLMHEHRRA VSRLA
|
|---|
| |