Gene Nham_3398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3398 
Symbol 
ID4030857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3738865 
End bp3741918 
Gene Length3054 bp 
Protein Length1017 aa 
Translation table11 
GC content67% 
IMG OID637971809 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_578588 
Protein GI92118859 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.801509 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGTTC TCAAACGGCA GTTTGCGGAA GGCCGAGAAT CGCCGATGTC GTCCCAGATT 
CCACCGCCGT TTTCGGCTTC CTACGCTCCG GACGACCGGG CCATGGCGGC GCTCCTGCTC
GCCGAGACGC GGCCGGTGCC CGAACGGGAA GCGCGGATCG ATCGCACGGC GCGCGGCCTG
ATCGACGCCA TCCGACGCAA CGACGATCCA CTGGGCGGCG TCGAGGACAT GCTGCGCGAG
TTTGCATTGT CGACCAGGGA AGGACTCGCG CTGATGGTGC TCGCCGAAGC GCTGCTGCGG
GTGCCCGATG CCGATACCGC GGACCGGTTC ATCGAAGACA AGCTCGGGCA AGGCGACTTC
ATCCATCACG AGACCAGATC CAGCGCCTTC CTCGTCAACG CCTCCGCCTG GGCGCTCGGG
TTGTCGGCGC GGGTCGTCCA GCCGGGCGAG ACGCCGCAGG GAACCATCGG GCGGCTCACC
AAGCGGCTCG GCGTTCCGGC GGTGCGGGCG GCGACGCGGC AGGCGATGCG GCTGATGGGC
GGCCACTTCG TGCTCGGCGA GACCATCGAG GCGGCGCTCG AGCGGGCGCA CGCGCACGCG
GCGGGACACG CCCGCTATTC CTTCGACATG CTCGGCGAGG GCGCGCGTAC CGCCGCGGAT
GCGGATCGTT ATTTCAAGTC CTACGCCGCC GCGATCGAGG CGATTGGCCA ATACGCCGGC
GACAGGCCCC TGCCCGACCG CCCCGGCATT TCCGTCAAGC TGTCGGCGCT GCATCCACGC
TTTGAGGCGG TGAGCCGACA ACGGGTGATG GCGGAACTGG TGCCGCGCGT CATCGATCTT
GCCGCGCGCG CCAAGGCGCA CGATCTCAAC TTCACGGTCG ATGCGGAGGA AGCCGATCGG
CTGGAACTGT CGCTCGACGT CATCGCCGCC GTCGCCGCCA ATCCCTCGCT CGCCGGCTGG
AGCGGCTTTG GCCTCGCCAT TCAGGCCTAT CAGAAGCGCG CCTCTGCGGT GATCGATTAC
ATCGACGACC TCGCGCGACA CCTCAATCGG CGGATGATGG TCCGTCTGGT GAAGGGCGCG
TACTGGGACA CCGAGATCAA GCGCGCGCAG GAACGCGGGC TCGACGGCTA TCCCGTATTC
ACCCGCAAGG CGATGACCGA CCTGAACTAC ATCGCCTGCG CAAAAAAACT GCTGACACTG
CGGCCACACC TCTTTCCGCA ATTCGCGACC CACAATGCCC TCACCGTCGC CACGCTTCTC
GAACTGACTG ACGGAGCCGA CGACGGATAC GAATTCCAGC GCCTGCACGG CATGGGCGAC
GCCCTCTACG CCAAGCTCGG CAAGGATCGT CCGGCCATCG CCTGCCGCAC CTATGCGCCC
GTCGGCAGTC ATCGCGACCT GCTCGCCTAT CTGGTGCGCC GCCTGCTCGA AAACGGCGCC
AACTCCTCCT TCGTCGCAAT GGCCTCCGAT CCGCGAGTCC CGGCGGACAC TCTGCTGCGC
CGACCGGCCG ATATCATCGG CAATGCCGAC AATGCCGGGC ATACGACGAT TCCGCTGCCG
CGCGATCTAT TTCAGCCGGA GCGCGTCAAT TCGCGTGGCA TCGAATTCGG CGAGCGCGCG
GCGCTGAACC GGCTGGTTGC CGACGTCGCT ACCAAACAAA CCTTGACCCT CACGGTGAAA
CACAGCGCGC CGGAGGACGT GGACCGCATT GTCTCTCTGG CGCGCGACGG ATTTCCGTCA
TGGAGCCGCA CACCGGCGGC TATGCGAGCG GCTGCCCTGG AGCGCGCAGC CGACTTGCTG
GAACAACGGT CGGCGCATTT CATCGCGCTG CTGCAGCGGG AAGGCGGCAA GACGCTGGAT
GATTCCGTGT CGGAGGTCCG CGAAGCCGCC GACTTCTGCC GCTACTACGC CGCGCAAGGC
CGCAAGCTGT TCGACAACGC GCAGCCGATG CCGGGGCCGA CCGGCGAGCG CAACACGTTG
CGGCTGCGCG GGCGCGGCGT CTTTGCCGCG ATCTCGCCGT GGAATTTTCC GCTGGCGATC
TTTACCGGAC AGATAACCGC GGCGCTGATG GCCGGCAATA CGGTGGCCGC GAAACCCGCC
GAGCAGACGC CGCAGATCGC GGCCGAGGCC GTGCGCCTGC TGCATGAGGC CGGCATCCCG
GAAACGGCGC TTCACCTGAT CCAGGGCGAT GGCCCCATCG GGGCTGCGCT TGTCGCGCAT
CGCGATATCG CCGGCGTGGT CTTCACCGGA TCGACGGTAG TGGCGCGGTC GATCAACCGC
TCGCTCGCCG CCAAGGACGG CCCCATCGTG CCGCTGATCG CCGAGACCGG CGGCATCAAC
GCCATGATCG CCGACGCCAC CGCGCTGCCC GAGCAGGTCG CCGACGATGT CGTGACTTCG
GCGTTCCGCT CCGCCGGGCA ACGCTGCTCG GCGCTGCGGC TGCTGTTCGT GCAGGATGAC
GTGGCCGACC GCATGATCGA GATGATCGCG GGCGCCGCGC GCGAACTGAG GATCGGCGAC
CCGTCCGATC CCGCCACGCA TGTCGGCCCG GTGATCGACC GCGAGGCCAA ACAGCAACTC
GATGCGCATA TCGCGCGCAT GACGCGCGAA GGTCGCGTGC GTTTCGCAGG ACAAGCGCCC
GCGTCCGGCA ATTTCGTCGC GCCGCATATC TTCGAACTGG CCGACGCGCG GCAACTGAGC
GAAGAGGTGT TCGGACCGAT CCTCCACGTC GTGCGTTATC GCGCCTCCGG CCTCGATGCG
GTTCTGCAAG CCATCGACGA CAGCGGCTAC GGCCTGACGC TCGGCATCCA CTCCCGCATC
GACGACACGA TCGAGGTGAT CGTCGATCGC CTCCAGGTCG GAAACGTCTA CGTCAACCGC
AACATGATCG GCGCGGTGGT CGGCGTGCAG CCCTTCGGCG GTCACGGCCT GTCGGGGACC
GGGCCCAAAG CCGGCGGCCC GAACTATCTC ACCCGTTTCG CGACCGAGCA GACCGTGACG
GTGAACACCG CAGCCGCCGG CGGTAATGCC GCATTGATGA CCGAAGAAGG GTAG
 
Protein sequence
MTVLKRQFAE GRESPMSSQI PPPFSASYAP DDRAMAALLL AETRPVPERE ARIDRTARGL 
IDAIRRNDDP LGGVEDMLRE FALSTREGLA LMVLAEALLR VPDADTADRF IEDKLGQGDF
IHHETRSSAF LVNASAWALG LSARVVQPGE TPQGTIGRLT KRLGVPAVRA ATRQAMRLMG
GHFVLGETIE AALERAHAHA AGHARYSFDM LGEGARTAAD ADRYFKSYAA AIEAIGQYAG
DRPLPDRPGI SVKLSALHPR FEAVSRQRVM AELVPRVIDL AARAKAHDLN FTVDAEEADR
LELSLDVIAA VAANPSLAGW SGFGLAIQAY QKRASAVIDY IDDLARHLNR RMMVRLVKGA
YWDTEIKRAQ ERGLDGYPVF TRKAMTDLNY IACAKKLLTL RPHLFPQFAT HNALTVATLL
ELTDGADDGY EFQRLHGMGD ALYAKLGKDR PAIACRTYAP VGSHRDLLAY LVRRLLENGA
NSSFVAMASD PRVPADTLLR RPADIIGNAD NAGHTTIPLP RDLFQPERVN SRGIEFGERA
ALNRLVADVA TKQTLTLTVK HSAPEDVDRI VSLARDGFPS WSRTPAAMRA AALERAADLL
EQRSAHFIAL LQREGGKTLD DSVSEVREAA DFCRYYAAQG RKLFDNAQPM PGPTGERNTL
RLRGRGVFAA ISPWNFPLAI FTGQITAALM AGNTVAAKPA EQTPQIAAEA VRLLHEAGIP
ETALHLIQGD GPIGAALVAH RDIAGVVFTG STVVARSINR SLAAKDGPIV PLIAETGGIN
AMIADATALP EQVADDVVTS AFRSAGQRCS ALRLLFVQDD VADRMIEMIA GAARELRIGD
PSDPATHVGP VIDREAKQQL DAHIARMTRE GRVRFAGQAP ASGNFVAPHI FELADARQLS
EEVFGPILHV VRYRASGLDA VLQAIDDSGY GLTLGIHSRI DDTIEVIVDR LQVGNVYVNR
NMIGAVVGVQ PFGGHGLSGT GPKAGGPNYL TRFATEQTVT VNTAAAGGNA ALMTEEG