| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3390 |
|---|
| Symbol | |
|---|
| ID | 4030849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3730702 |
|---|
| End bp | 3731748 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637971801 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_578580 |
|---|
| Protein GI | 92118851 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3768] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR01620] conserved hypothetical protein, TIGR01620 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.244844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGC GATCCGGCTT GCGCCGTCCC GTCACCTTCA AGCTCGACGA TCCGAATGTC
GTGGTCCTGG ATCCCGACGA GGAGGCGGCC CGGCCTACGC GCAGCAGCAT CAGCATCACG
CCGGAAGCCG AGCCGGAGCC CGAGCCCGTG TTGCTGCCGG AGGCGCCGGA GATGCCTCCG
GTGCCGGCGC GGAAGGGATT TCGCTGGGGC GTGCTGTTCT GGTCGTCTCT CGGTGGGCTC
GTCGTGCTCG GTACCGTGCT CGGCGCAATA AACCTGATCC ACGACCTGTT TGCACGCAAC
GAGACGCTCG GCTTCCTCGG GCTGGTGCTG GCGGCGCTGT TCGTGGTTGC ATCGATCGTC
ATCGCGGCGC GCGAGATCGC GGGCCTTGCC CGTCTCTCCA CCATCGAAAA CATGCATCGG
CGCGCGCTGG CCGCAATCGC GGCCGACGAT CGCAAGGGAG CCGATGCGGT CGTCCGCGAT
CTGGTGAAGC TCGCCCACGA CAACCCGCAC CTTGCGCGGG CGCGGGCCAC GCTGCGGAGC
CACGGCTCCG ACATCATCGA TGGCGCCGAT CTGGTGCGGC TCGCCGAACG CGAGCTGATG
GCTCCGCTGG ATCAGGAAGC ACGCCGGCTG GTGTCGGTGG CGGCGCAGCG CGTGTCGATC
GTGACCGCGA TCAGCCCCCG CGCCGTGGTG GATGTGCTGT TCGTATTCGC TGCGGCGATG
CGGCTGGTGC GGCAGCTCGC GCGCCTGTAT GGCGGAAGGC CCGGCACGCT CGGAATGATC
CGCCTGATTC GCCACGTCAT AGCGCATCTC GCCATCACCG GCGGCATGGC GGCCAGCGAC
ACGGTGATCC AGCAAATGCT CGGCCAGGGC ATCGTCGCGA AGCTGTCGAC GCGTCTGGGC
GAAGGCGTCC TCAACGGATT GCTGACCGCG CGCCTCGGGC TGGCGGCGAT CGACGTCACC
CGGCCGATGC CGTTCACCGC ACTGCCGCGG CCCGCGCTCG GCGATCTTGC GAAAGACCTG
TTACGCAAGC GCCGCGACGA CAACTAG
|
|---|
| Protein sequence | MSERSGLRRP VTFKLDDPNV VVLDPDEEAA RPTRSSISIT PEAEPEPEPV LLPEAPEMPP
VPARKGFRWG VLFWSSLGGL VVLGTVLGAI NLIHDLFARN ETLGFLGLVL AALFVVASIV
IAAREIAGLA RLSTIENMHR RALAAIAADD RKGADAVVRD LVKLAHDNPH LARARATLRS
HGSDIIDGAD LVRLAERELM APLDQEARRL VSVAAQRVSI VTAISPRAVV DVLFVFAAAM
RLVRQLARLY GGRPGTLGMI RLIRHVIAHL AITGGMAASD TVIQQMLGQG IVAKLSTRLG
EGVLNGLLTA RLGLAAIDVT RPMPFTALPR PALGDLAKDL LRKRRDDN
|
|---|
| |