| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3240 |
|---|
| Symbol | |
|---|
| ID | 4031902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 3572001 |
|---|
| End bp | 3574067 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637971653 |
|---|
| Product | cytochrome c1 |
|---|
| Protein accession | YP_578435 |
|---|
| Protein GI | 92118706 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1290] Cytochrome b subunit of the bc complex
[COG2857] Cytochrome c1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAC CATCCAGCTT CCAGCCGCAA AATCCCGTCA TCAAATGGAT CGAGCGGCGC
TTGCCGATCT TCGGCCTCGT GCATTCCTCG TTCGTCGCCT ATCCGACGCC GCGCAACCTG
AACTACTGGT GGACGTTCGG CGGCATCCTC TCCTTCATGC TTGCCGTGCA GATCGTAACC
GGCGTGATCC TGGCGATGCA CTACACGCCG GAAGCGACCA TGGCCTTCAA TTCGGTCGAA
GCCATCGTCC GCGACGTCGA CTACGGCTGG CTGTTGCGTT ATCTCCATTC GAACGGCGCC
TCGATGTTCT TCATCGCCGT TTATGTCCAC ATGCTTCGCG GCCTGTATTA CGGCTCCTAC
AAGGAACCGC GCGAGGTCCT CTGGATCCTC GGCGTCATCA TCTACCTGTT GATGATGGCG
ACCGGCTTCA TGGGCTACGT GCTGCCGTGG GGTCAGATGA GTTTCTGGGG CGCGACCGTC
ATCACCAACC TGTTCTCCGC CATTCCCTAT TTCGGCGAGA GCATCGTGAC CCTGCTGTGG
GGCGGCTATT CGGTCGGCAA TCCGACGCTC AATCGCTTCT TCTCGCTGCA CTACCTGCTG
CCGTTCGTGA TCGCGGGCGT GGTTGTGCTG CACGTCTGGG CGCTGCATGT CGCCGGTCAG
AACAATCCGG CCGGCGTCGA GCCCAAGACC GCGAAGGATA CGGTGCCGTT CACACCTTAC
GCGACCACCA AGGATGCATT CGGCCTGTCC TGCTTCATCC TGTTCTATTG CTGGTTCGTC
TTCTACATCC CGAACTATCT CGGAGATCCC GACAACTACA TCCCGGCCAA CCCGGGCGTG
ACGCCCGCGC ACATCGTGCC GGAATGGTAC TATCTGCCGT TCTACGCGAT CCTGCGCTCG
ATCCCGAACA AGCTCGCGGG CGTGGTGGCG ATGTTCAGCG CCATTCTGGT TCTGGCCTTC
CTGCCCTGGC TCGATTCCGC CAAGACCCGC TCGGTGCGTT ATCGTCCGCT CGCCAAGCAG
TTCTTCTGGA TTTTTGTCGC GGTCTGTCTC GGCCTCGGCT ATCTGGGCGC GCAGCCGCCG
GAAGGCATTT ATGTGATCGT CGGGCGCATC CTGACGGTGT GCTACTTCGC CTATTTCCTG
ATCGTGCTGC CGACCCTGAG CCGCATCGAG AAGCCTCGCA CTGTTCCCAA TTCGATCGCC
GACGACGTGT TGGGGAAGAA ACGCTATGTG GCCTCGGCCT TGGCGGTGCT CGCGGCCGTC
GGATTGCTGG CGCTGGATAG CGGCTCGACG GCGCGGGCGG CGGAGGGGCA TGGCCCGCCG
GCTCCGTCCT CGCTGAGCTG GTCGTTCGCG GGCCCGTTCG GAAAATTCGA TCAGGGCCAG
CTGCAGCGCG GCTACAAGGT CTACAAGGAC GTCTGTGCGT CCTGCCATTC GATGAACCTG
CTGCACTATC GCAACCTGGC CGATCCCGGC GGTCCGGGCT TTTCCATCGC CCAGGCCGAA
GCGCTGGCTT CCGAGATCCA GGTGAAGGAC GGTCCCAACG ACGCCGGCGA CATGTTCGAG
CGGCCGGGAC GTCTCGCCGA CAGGCTTCCG GCGCCGTTTC CAAACGAGAA CGCCGCTCGC
GCGGCCAACG GCGGTGCGGC TCCGCCCGAT CTTTCCCTGA TGGCCAAGGC GCGCGGCTAC
GAGCGCGGCT TCCCGCAGTT CATCTTCGAT GCCTTTACCC AGTTCCAGGA AAAAGGCCCG
AATTACATCT ATGCACTCCT GACCGGTTTC AAGGACGAGC CGCCCAAAGG GTTCGCGCTG
CCGGAGGGCT CGTTCTACAA CCAGTACTTC CCGGGCCATG CCATCAAGAT GCCGAACCCG
CTGTCGGACG ACCAGGTGAC GTATGACGAC GGGACGCCGC AGAAGGTCGA TCAATATGCG
AAGGACGTGT CCGCCTTCCT GATGTGGGCC GCCGAGCCGA AGCTGGAGGA GCGCAAGCGG
ATCGGTCTGC AGGTCATGAT TTTCATGCTC GTGTTTGCCG GGCTGCTCTA CTTCACCAAG
AAGGCGGTCT GGGCCGACGC GCATTGA
|
|---|
| Protein sequence | MSGPSSFQPQ NPVIKWIERR LPIFGLVHSS FVAYPTPRNL NYWWTFGGIL SFMLAVQIVT
GVILAMHYTP EATMAFNSVE AIVRDVDYGW LLRYLHSNGA SMFFIAVYVH MLRGLYYGSY
KEPREVLWIL GVIIYLLMMA TGFMGYVLPW GQMSFWGATV ITNLFSAIPY FGESIVTLLW
GGYSVGNPTL NRFFSLHYLL PFVIAGVVVL HVWALHVAGQ NNPAGVEPKT AKDTVPFTPY
ATTKDAFGLS CFILFYCWFV FYIPNYLGDP DNYIPANPGV TPAHIVPEWY YLPFYAILRS
IPNKLAGVVA MFSAILVLAF LPWLDSAKTR SVRYRPLAKQ FFWIFVAVCL GLGYLGAQPP
EGIYVIVGRI LTVCYFAYFL IVLPTLSRIE KPRTVPNSIA DDVLGKKRYV ASALAVLAAV
GLLALDSGST ARAAEGHGPP APSSLSWSFA GPFGKFDQGQ LQRGYKVYKD VCASCHSMNL
LHYRNLADPG GPGFSIAQAE ALASEIQVKD GPNDAGDMFE RPGRLADRLP APFPNENAAR
AANGGAAPPD LSLMAKARGY ERGFPQFIFD AFTQFQEKGP NYIYALLTGF KDEPPKGFAL
PEGSFYNQYF PGHAIKMPNP LSDDQVTYDD GTPQKVDQYA KDVSAFLMWA AEPKLEERKR
IGLQVMIFML VFAGLLYFTK KAVWADAH
|
|---|
| |