| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3196 |
|---|
| Symbol | groEL |
|---|
| ID | 4033362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3521996 |
|---|
| End bp | 3523633 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637971609 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_578391 |
|---|
| Protein GI | 92118662 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCCA AGGACGTCAG GTTTTCCGGC GACGCGCGCG ACCGCATGCT GCGCGGCGTC
GATATCCTCG CCAACGCCGT AAAGGTGACC CTCGGCCCGA AGGGCCGCAA CGTCGTGATC
GAGAAGAGCT TCGGCGCGCC ACGCATCACC AAGGACGGCG TCACCGTCGC CAAGGAGATC
GAGCTCGACG ACAGGTTCGA GAACATGGGC GCGCAGATGG TGCGCGAGGT CGCCTCCAAG
ACCAACGACA CCGCCGGCGA CGGCACCACC ACCGCCACCG TGCTGGCCCA GGCCATCGTC
CGCGAGGGCG CCAAGGCCGT TGCCGCCGGC ATGAATCCGA TGGACCTCAA GCGCGGCATC
GACATCGCGG CCGCGGCCGT GGTGAAGGAC ATCGGCAAGC GCGCCAAGCC GGTCGCATCC
TCGGCCGAAG TCGCGCAGGT CGGCACCATC TCCTCCAACG GCGACACCGC GATCGGCAAG
ATGATCGCGC AGGCGATGCA GAAGGTCGGC AACGAGGGCG TCATCACCGT CGAGGAGAAC
AAGTCGCTCG AAACCGACGT CGACATCGTC GAGGGCATGA GGTTCGACCG CGGCTACCTC
AGCCCCTACT TCGTCACCAA TGCCGAGAAG ATGACCGCCG AACTCGACGG CGCCTACATC
CTGCTGCACG AGAAGAAGCT GTCCGGCCTT CAGGCCATAC TGCCGTTGCT CGAGGCGGTG
GTGAAGTCGG GCAAGCCGCT GCTGATCGTG GCGGAAGACA TCGAGGGCGA GGCGCTGGCG
ACGCTGGTGG TCAACCGGCT GCGGGGCGGC CTCAAGGTCG CAGCCGTCAA GGCGCCCGGC
TTCGGCGATC GCCGCAAGGC CATGCTGGAG GACATCGCGA TCCTCACCGG TGGCCAGCTC
ATCTCCGACG ACCTCGGCAT CAAGCTAGAG AACGTCACCG TGGACATGCT CGGCCGCGCC
AAGAAGGTGG TGATCGACAA GGAGAACACC ACAATCGTCA ACGGCGCCGG CAAGAAGAAA
GATATCGAAG CGCGGGTCGG ACAGATCAAG GCGCAGATCG AGGAGACCAC CTCGGACTAC
GACCGCGAGA AGCTGCAGGA GCGTCTGGCC AAGCTCGCCG GCGGCGTCGC GGTGATCCGC
GTCGGCGGAG CCACCGAGAT CGAGGTCAAG GAAAAGAAGG ATCGCGTCGA GGATGCCCTC
AACGCCACCC GCGCAGCCGT GCAGGAAGGC ATCGTGCCCG GCGGCGGCAC CGCGCTGCTG
CGCGCCAAGA AGGCGGTCGG GCGCATCGCC AACGACAACC CGGACGTGCA GGCCGGCATC
AACATCGTAC TGAAGGCGCT GGAAGCCCCG ATCCGCCAGA TCGCGGAAAA CGCCGGCGTC
GAGGGGTCCA TCGTTGTCGG CAAGGTTCTC GAAAACAAGA CCGAGACCTT CGGCTTCGAC
GCCCAGAAGG AAGAGTATGT CGACATGGTC GCCAAGGGCA TCATCGATCC GGCCAAGGTG
GTGCGCACCG CTTTGCAGGA TGCCGCGTCG GTCGCGGGCC TGCTCGTGAC CACAGAAGCC
ATGGTCGCCG AACTGCCGAA GGAGGAGCCG GCGCCGGCTA TGCCGGGCGG CGGTGGCATG
GGCGGCATGG GCTTCTGA
|
|---|
| Protein sequence | MSAKDVRFSG DARDRMLRGV DILANAVKVT LGPKGRNVVI EKSFGAPRIT KDGVTVAKEI
ELDDRFENMG AQMVREVASK TNDTAGDGTT TATVLAQAIV REGAKAVAAG MNPMDLKRGI
DIAAAAVVKD IGKRAKPVAS SAEVAQVGTI SSNGDTAIGK MIAQAMQKVG NEGVITVEEN
KSLETDVDIV EGMRFDRGYL SPYFVTNAEK MTAELDGAYI LLHEKKLSGL QAILPLLEAV
VKSGKPLLIV AEDIEGEALA TLVVNRLRGG LKVAAVKAPG FGDRRKAMLE DIAILTGGQL
ISDDLGIKLE NVTVDMLGRA KKVVIDKENT TIVNGAGKKK DIEARVGQIK AQIEETTSDY
DREKLQERLA KLAGGVAVIR VGGATEIEVK EKKDRVEDAL NATRAAVQEG IVPGGGTALL
RAKKAVGRIA NDNPDVQAGI NIVLKALEAP IRQIAENAGV EGSIVVGKVL ENKTETFGFD
AQKEEYVDMV AKGIIDPAKV VRTALQDAAS VAGLLVTTEA MVAELPKEEP APAMPGGGGM
GGMGF
|
|---|
| |