| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3171 |
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| Symbol | |
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| ID | 4030244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3496829 |
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| End bp | 3498892 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637971584 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_578366 |
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| Protein GI | 92118637 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.601748 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGTAG CGAGATCATT CATGCCCCGC GATAACGACA AAGACAATGC ATCCTCGCGC
GGCCGGCGTG ATCGGCCCTC CGGCGGCAAG GGCCGTTCCG GCGCGGCGCG CGGGCCGGAA
AAGAAGTTCG CCAAGCGCGG CCTTGCCGGC AAGACCGACA AAGGTGACGG CGACAAGCGG
CCCTATGCCG GCAAATCCGA TGGCACGAAG CCCTATGCCA AGAAGCCTTA CGCCAGGAAG
CCGTATGGCG CGGGCAAACC CTACGCGAGC AAGCGCGATG GCGATGCCGC ACGGCCCCGC
TTCAATCGTG ACGGCGGCAG CGAGAAGCGC CCCTATGCGC CCCGAGGGGA TTCACCTCGC
AGCGAACGCC CGGCCTTCAA ACGTGACGAT CGCGCGCCGC GCGCCGACCG TGGCGATACG
CGTCCGGCAG GGCGCCCTGC CGACAAGAAG TTCGGCGAGA AGCGTTCGTA TGCGCCGCGC
GGAGATCGTC CCTTCGGTGA CAAGAAGTTT TCGCGCGGCG CGCCGGATCG CGGTCCGCGC
AAGGAGTTCG GCGATCGTGC GGATCGCGGC GAGTCCAAGC CGTGGGAGAA GCGCGAGGCC
CGTCCTCGCG ATGATGCGCG CCGCGAGTCC CGGCCCTCCC GCGATGGCGC CGGGCGTTTC
GACAAGCCTC GTTTCGACCG GCCGCGCGAC GATCGCGGCG GCTCCGGGCG TCCACGATTC
TCGAAACCAC GAGAGGATCG TCCGGAGCGC ACTGCAGGCG GCGATCGTGG CCCGCGCAAG
TTCGACCGGC CGCAAGGCGA CCGTCCGCGT TATGAACGTC CGACCGGGGA TCGTCCCCGC
TTCGATCGCC CGCGCCAGGA CCGTCCTGAC GGCGATCGTC CTGGTGGTTC CCGCAACGCG
TGGCAGGAGC GGCCACGTCG CAATGACCGC GACGAGCGTC CGCGTCGCGA CAACGAGGAT
GACAGCAGGG TTTTCGCCAA ACGTCCGGCG TTCGGGGGAC GCGGCGCTTA TCGCGAACGC
AAGCCTGACG ACGACCGGCG CGGAGCACGG CCCGAACCAA GGTCGAAGAA GACCGGCGAA
CGCATCGCGA AGGTGATGGC GCGCGCAGGC GTCGCCTCGC GCCGCGACGC CGAGGAATGG
GTCACGCAGG GCCGCGTTGC CGTCAACGGC CGCGTCATCA ACTCGCCGGC GCTCGATGTC
ACCTCGCGCG ATGTCATCAC GATCGACGGC CAGCCGTTGC CGGAGCGCGA GCGCACGCGG
CTGTTCCTGT ACCACAAGCC GCGCGGCCTG ATGACGACCC ACGCCGACCC GGAAGGGCGG
CCGACCGTGT TCGACAATCT GCCTGAAGGT CTGCCGCGCC TGATCAGCAT CGGCCGGCTC
GATTTCAACA CCGAAGGGTT GCTGCTGCTG ACCAATGACG GCGGTCTGGC GCGCGCGCTG
GAACTGCCCG ACACCGGCTG GCTGCGGCGC TATCGCGTCC GCGCCCACGG CGAGGTGACG
CAGGCGCAGC TCGATGCGCT GAAGAACGGC GTCGAGGTCG ACGGCGTCAA GTATGGCTCG
ATCGACGCCA CGCTGGAGCG CGACCAGGGC GCCAATGTCT GGCTGGTGTT CGCTATACGC
GAGGGCAAGA ACCGCGAGGT GCGCAACGTG ATGGCCCACC TCGGGCTCGA GGTGAACCGG
CTGATCCGGG TCTCCTATGG ACCGTTCCAA CTGGCCGAGA TCGCGGAAGG TCAGGTCGAG
GAGGTCAAGA CCCGCGTGCT GCGCGAGCAG CTCGGCGATA AAATCGCCGC GCTCGCCAAT
GCGAATTTCG CCGGCACGGC CGCCGAAGCC GAGACCGAGC CAAAGCTCGG CCGCGACGGC
ACACCATTAC GCTCGAAGAA GGACAACAAG GCGAGAGCGA AGCGCTCGCT GATTGAGGAT
CGCAAGGGCC GCAACGTCGT GGTGCAGCGA ACCGGCAGCG ACGAGGCGCG GGCGCGCAAC
GAAGCCGAGG CCAATGGCTA CGGTCCGCCA CGCCGGCCGA AGCGCGGCTA TCACGGCAAG
CGCGATCTGA CGCCTCGGGA CTGA
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| Protein sequence | MPVARSFMPR DNDKDNASSR GRRDRPSGGK GRSGAARGPE KKFAKRGLAG KTDKGDGDKR
PYAGKSDGTK PYAKKPYARK PYGAGKPYAS KRDGDAARPR FNRDGGSEKR PYAPRGDSPR
SERPAFKRDD RAPRADRGDT RPAGRPADKK FGEKRSYAPR GDRPFGDKKF SRGAPDRGPR
KEFGDRADRG ESKPWEKREA RPRDDARRES RPSRDGAGRF DKPRFDRPRD DRGGSGRPRF
SKPREDRPER TAGGDRGPRK FDRPQGDRPR YERPTGDRPR FDRPRQDRPD GDRPGGSRNA
WQERPRRNDR DERPRRDNED DSRVFAKRPA FGGRGAYRER KPDDDRRGAR PEPRSKKTGE
RIAKVMARAG VASRRDAEEW VTQGRVAVNG RVINSPALDV TSRDVITIDG QPLPERERTR
LFLYHKPRGL MTTHADPEGR PTVFDNLPEG LPRLISIGRL DFNTEGLLLL TNDGGLARAL
ELPDTGWLRR YRVRAHGEVT QAQLDALKNG VEVDGVKYGS IDATLERDQG ANVWLVFAIR
EGKNREVRNV MAHLGLEVNR LIRVSYGPFQ LAEIAEGQVE EVKTRVLREQ LGDKIAALAN
ANFAGTAAEA ETEPKLGRDG TPLRSKKDNK ARAKRSLIED RKGRNVVVQR TGSDEARARN
EAEANGYGPP RRPKRGYHGK RDLTPRD
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