| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3025 |
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| Symbol | |
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| ID | 4032154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3328309 |
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| End bp | 3329622 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637971449 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_578231 |
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| Protein GI | 92118502 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.20021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACA ATCTGGACTC GGCCCAGCAT TCGATTCAGC GCTACCTGCT GGCAGGAACG
TTTCTCGTCT TGCTGGTGAC GTTTGGAATT GGCGGTTGGG CCGCAACTAC CGAGCTCTCA
AGCGCTGTGG TCGCGCCGGG CGTTCTCGTT GTCGATTCCA GTGTCAAGAA AGTCCAGCAC
CCGACGGGAG GTGTCATCGG CGAACTGCGC GTGCGCGATG GTGACCACGT GCGTGCGGGT
GACATTCTGG TTCGTCTTGA CGAAACGCAA ACCCGGGCAG CGGCGACGAT CATCACCAAA
AGCGTCGATG AGCTCCTGGC GCGTCAGGCG CGCCTCGAAA CCGAACGTGA TAATATTCCG
GAACTCGCTT TCCCAGCCGC TCTCCTGGAT CGCGCTCACG ATCCGGCCTC AGACGCCGCT
CGCGCTGTCG CCGCGGAGCG CAGTCTTTTC GACCTGCGCC GTCAGGCGCG CGAAGGACAA
AAGTCGCAGC TCAAGGAACG CTCCGCGCAA CTACAGGATG AAATCAAGGG CTACCAGGGA
CAAGTCGAAG CGAAAAAGAA AGAAGTCGAC TTCATCCAGC AGGAACTCGA AGGCGTACGA
ACTCTTTTTC AGAAGAATCT CGTGCCGATC AGCCGTTTGA CGGCTCTGGA GCGCGATTCG
GCCCGTATCG AAGGCGAGCG AAGTCAATTG TCTGGTATGA TTGCGCAGGC CAAGGGCAAG
ACGGCCGAGA TCCAGCTTCA GATTATCCAG ATCGACCAGG ATCTCCGCAG CGAGGTCGGT
AAGGATCTCG TCGAGGTGCG CTCAAAGATT TCCGAAATGG CTGAACGCAA GATCGCCGCG
GTTGACCAGT TGCAGCGCAT TGACATTCGC GCGCCCCAGG ATGGCGTTGT CTATCAGCTC
TCGGTGCATA CCGTCGGTGG CGTGATCGCG CCCGGCGAGC AAATCATGCT GATCGTGCCC
GATGCCGATA CCCTAGCGGT TGAAGTCAAG ATCGCGCCCC AGGATATCGA TCATGTCCAT
GTCGGACAGC TGGCCATCCT GCGGTTTTCC GCATTCAACC AGCATACCAC GCCAGAAATA
ACGGGCGCGG TCAGTGTGAT CTCTCCGGAT CTTACACAGG ATCAGCGTAC GGGCACCAGC
TTCTACACAA CGCGTATCGC GTTGAAGCCG GAGGAGCTTG AACGTCTGGG CTCGGTCAAG
CTCATTCCCG GCATGCCTGC GGATGCCTTT ATTCAGATGG GAGACCGCAC AGTGCTATCC
TATTTGATGA AGCCTCTGCG TGATCAGGCC GCAAGAGCAT TCAAGGAAAA ATAG
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| Protein sequence | MSNNLDSAQH SIQRYLLAGT FLVLLVTFGI GGWAATTELS SAVVAPGVLV VDSSVKKVQH
PTGGVIGELR VRDGDHVRAG DILVRLDETQ TRAAATIITK SVDELLARQA RLETERDNIP
ELAFPAALLD RAHDPASDAA RAVAAERSLF DLRRQAREGQ KSQLKERSAQ LQDEIKGYQG
QVEAKKKEVD FIQQELEGVR TLFQKNLVPI SRLTALERDS ARIEGERSQL SGMIAQAKGK
TAEIQLQIIQ IDQDLRSEVG KDLVEVRSKI SEMAERKIAA VDQLQRIDIR APQDGVVYQL
SVHTVGGVIA PGEQIMLIVP DADTLAVEVK IAPQDIDHVH VGQLAILRFS AFNQHTTPEI
TGAVSVISPD LTQDQRTGTS FYTTRIALKP EELERLGSVK LIPGMPADAF IQMGDRTVLS
YLMKPLRDQA ARAFKEK
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