Gene Nham_2960 details

Gene Information

• Locus tag: Nham_2960
• ID: 4033111
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 3252187
• End bp: 3252834
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637971403
• Product: ThiJ/PfpI
• Protein accession: YP_578185
• Protein GI: 92118456
• COG category: [K] Transcription
• COG ID: [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCTGG GAATACCCGT TTATCAGGGC GTTAATCTGC TCGATGTCGC CGGCCCCCTC 
GAAATGTTCT ATTGGGCGGG CCAGAACGAT GACGATTTAC AGACGGTTCT GATCTCTGAG 
GACGGTGGAG CCGTTACCTC CATAAACGGC GTGCGTTTTG AGGCGCAGGC GAGTTTCTCC 
CAGACGCCGG CACTCGATAT CCTGTGGGTC CCCGGCGGCG ACCCCGTTGC GCTGCAAACC 
ATCATGAAAG CCCCCTATTC CCCTTACCTG CAATATCTTC GCCAGATAGC AGCCAACGCG 
AAATGGGTTT GCTCGGTGTG CGAGGGCGCG CTGTTGCTCG CGCGTGCCGG ATTGCTGGAC 
GACCATGAGG CGACCACTCA CTGGTACTTC ACCGCCTGTC TACAGAGCTT CCCCAATATC 
ACGGTGGATA CTACCCGTCA GCGCTTTGTG GTCTCCCGCA ACGCCTCCGG AAATCGGTTG 
ACCGGAGGCG GCATATCCTC AGGCCTCGAT GAGGCGCTGA AACTTATTTC CTTGCTGTTC 
GGCGACAAGA GCGCCGAACA GGTACAGATC AACACGCAGT ATTTCCCGAA ACCGCCCGTG 
ATGGGCGTGA TCCCCCAGTC ACCAGAATGC TCGATCAGAT GGGGCTGA 

 

Protein sequence

MKLGIPVYQG VNLLDVAGPL EMFYWAGQND DDLQTVLISE DGGAVTSING VRFEAQASFS 
QTPALDILWV PGGDPVALQT IMKAPYSPYL QYLRQIAANA KWVCSVCEGA LLLARAGLLD 
DHEATTHWYF TACLQSFPNI TVDTTRQRFV VSRNASGNRL TGGGISSGLD EALKLISLLF 
GDKSAEQVQI NTQYFPKPPV MGVIPQSPEC SIRWG