| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2936 |
|---|
| Symbol | hemE |
|---|
| ID | 4031276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3224870 |
|---|
| End bp | 3225922 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637971380 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_578162 |
|---|
| Protein GI | 92118433 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCACAGG ATTCGACCAT CAAGCCATTT CTCGAAGTGC TTTCGGGCCG CCGCCAGGCC
GTGCCGCCGA TCTGGATGAT GCGGCAGGCG GGACGCTATC TGCCGGAATA TCGCGAGCTG
CGCGCGAAAG CCGGCGGTTT TCTCGATCTC TGCTTCACGC CGGAATTCGC CGCCGAGGTG
ACGTTGCAGC CGATCCGCCG CTTCGCGTTC GACGCCGCCA TCATCTTCTC CGACATCCTC
GTCATTCCCT ATGCGCTCGG GCGCTCGGTG CGTTTCGAAG TCGGTGAAGG CCCGCGGCTC
GATCCGCTGG ATACGCCGGA CATGGCGGCT ACGCTTTCGC GCGAAGCCGA CATGACGAAG
CTTGAGCCGG TGTTCGAGGC GCTGCGCCGC GTCAGGCGCG AACTCGATTC AAAAACAGCA
CTGATCGGTT TCTGCGGCGC GCCATGGACG GTGGCGACCT ACATGGTCGC CGGACGCGGC
ACGCCCGATC AGGCGCCGGC GCGGATGATG GCCTATCGCC ACCCCGAGGC GTTTGCGAAA
ATCATCGACG TGCTGGTGGA GAATTCCGTC CGCTATCTGC TCGGCCAGCT CAAAGCCGGC
GCCGATGTGC TGCAGATTTT CGATACCTGG GCGGGCGTGC TGCCGCCGCG CGAATTCGCG
CGGTGGTCGA TCGAACCCAC GCGCAGAATC GTGGAAGGCG TCCGCAAGAT CGTGCCGGAC
GCAAAAATCA TCGGCTTTCC CCGTGGCGCC GGCGCGCTGC TGCCGTCCTA TATCGAGGCG
ACCGGCGTCG ACGCCGTCAG CATCGACTGG GCCGCCGAGC CATCATTGGT CCGGGAGAAG
GTCCAGAGCC GGGTCGCCGT TCAGGGTAAC CTCGATCCGC TGGCGCTGAT CGCAGGCGGC
GCCGCGCTCG ATCGTGCGGT CGATGACGTG CTGGCGAATT TTGCCGGAGG TCGCCTGATC
TTCAATCTCG GCCACGGCAT TCAACCGGAA ACGCCGATCC CGCACGTCGA ACAGATGATC
CGCCGGGTGC GCGGGAGCGG CTTGCGCGAA TAG
|
|---|
| Protein sequence | MAQDSTIKPF LEVLSGRRQA VPPIWMMRQA GRYLPEYREL RAKAGGFLDL CFTPEFAAEV
TLQPIRRFAF DAAIIFSDIL VIPYALGRSV RFEVGEGPRL DPLDTPDMAA TLSREADMTK
LEPVFEALRR VRRELDSKTA LIGFCGAPWT VATYMVAGRG TPDQAPARMM AYRHPEAFAK
IIDVLVENSV RYLLGQLKAG ADVLQIFDTW AGVLPPREFA RWSIEPTRRI VEGVRKIVPD
AKIIGFPRGA GALLPSYIEA TGVDAVSIDW AAEPSLVREK VQSRVAVQGN LDPLALIAGG
AALDRAVDDV LANFAGGRLI FNLGHGIQPE TPIPHVEQMI RRVRGSGLRE
|
|---|
| |