| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2866 |
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| Symbol | |
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| ID | 4029422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3157852 |
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| End bp | 3160005 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637971309 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_578094 |
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| Protein GI | 92118365 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00102705 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAGCA AGGCAAAGAC GCTGCAGGTC AAGGACAAGG AAAAAGACGA CAAGGCAGCC
GACGCCCCCG AGAAGGATGC TGCGGACGCG CCGTCGCCGC TGCTCGACCT GTCCGACGCC
GCCGTCAAGA AGATGATCAA GCAGGCCAAG AAGCGCGGCT TTGTCACCTT CGACCAGCTC
AACGAAGTGC TGCCGTCCGA CACCACCTCG CCGGAGCAGA TCGAGGACAT CATGTCGATG
CTCTCGGATA TGGGTATCAA CGTGTCCGAG TCCGACGAGG CCGACAGCGA GGACGAAAAC
AAGGAGGAGG CCGAGGACGA GACCGACAAC GAGTTGGTCG AAGTCACGCA GAAGGCCGTC
ACCGAGGTCA AGAAGTCGGA GCCGGGCGAA CGCACCGACG ATCCCGTGCG GATGTACCTG
CGCGAGATGG GCACTGTCGA GCTGCTGTCG CGCGAGGGCG AGATCGCCAT CGCCAAGCGC
ATCGAGGCCG GCCGCGAGGC GATGATCGCG GGGCTCTGCG AAAGCCCGCT GACCTTCCAG
GCCATCATCA TCTGGCGCGA CGAACTCAAC GAGGGAAAAA TCTTCCTGCG CGACATCATC
GACCTCGATG CGACCTATGC CGGCCCCGAC GCCAAGAACA ACATGAACCC GGCGTTGCTC
GGGGCGCCGA CCGGCCCCGA CGGCCAGCCG CTGCCGGCGG GCGACGCCGC CGCGGCATCG
GGCGAGGGCG ACCTCGGCGC CACCGTGACC GCCCCCCCCG CAGCACCGCC GTCGCCGACC
CCGTTCCGTG CGGTGCGGGG TGCGCCGGCC GGAGCTGGCG ACCGGGACGA AAAGGATCAG
ACCGGGGCCG CCGAAGGCGA GATGGAGGAG GACGACTTCG ACAACCAGAT GTCGCTCGCG
GCCATCGAGG CCGAGTTGAA GCCGAAGGTG GTCGAAACCT TCGACAAGAT CGCGGACAAC
TACAAGAAGC TGCGCCGCCT GCAGGAAGCC GACATCTCCA ACCAGCTCCA GAGCGAAACG
CTCTCGCCGA ATCAGGAGCG CCGCTACAGG AAGCTAAAGG ACGAGATCGT CGTCGAGGTG
AAGTCGCTGC GGCTCAACCA GGCGCGCATC GACTCGCTGG TCGAGCAGCT TTACGACATC
AACAAGAGGC TCGTCTCGTT CGAGGGGCGC CTGTTGCGGC TTGGCGACAG CCACGGCGTC
GCGCGCGAGG ACTTCCTGAG GAATTACCAG GGCTCGGAGC TGGATCCGAA GTGGATCAAC
CGGGTCTCGA AGCTGTCAGC GAAGGGCTGG AAGAATTTCG TTCATCACGA GAAGGACCGC
ATCAAGGAGC TGCGCGGCGA GATCCAGCAG CTCGCGGCGC TGACCGGGCT CGAGATCGGC
GAATTCCGCA AGATCGTGCA CAGCGTGCAG AAGGGCGAGC GCGAGGCCCG CCAGGCCAAG
AAGGAAATGG TGGAGGCGAA CCTGCGCCTC GTCATCTCCA TCGCCAAGAA GTACACCAAT
CGCGGCCTTC AGTTCCTCGA CCTGATCCAG GAAGGCAACA TCGGCCTGAT GAAGGCGGTG
GACAAGTTCG AGTACCGCCG CGGCTACAAG TTCTCGACCT ATGCGACCTG GTGGATTCGG
CAGGCGATCA CGCGCAGCAT TGCGGATCAG GCACGCACCA TCCGCATCCC CGTGCACATG
ATCGAGACCA TCAACAAGAT CGTGCGCACC TCGCGCCAGA TGCTGAACGA GATCGGCCGC
GAGCCGACGC CGGAGGAACT CGCCGAGAAG CTCGGGATGC CGCTGGAGAA GGTGCGCAAG
GTTCTCAAGA TTGCCAAAGA GCCGTTGTCG CTGGAGACGC CGGTCGGCGA CGAGGAAGAC
AGCCACCTCG GCGATTTCAT CGAGGACAAG AACGCGGTGC TCCCCATTGA CGCCGCGATC
CAGAGCAATC TTCGTGAAAC AACGACGCGA GTTCTCGCGT CGTTGACCCC GCGCGAAGAA
AGAGTGCTGC GTATGCGCTT CGGCATCGGC ATGAACACCG ACCACACGCT GGAGGAAGTC
GGCCAGCAGT TCTCGGTGAC ACGCGAACGC ATCCGCCAGA TCGAGGCCAA GGCATTGAGA
AAACTCAAGC ACCCGTCAAG GAGCCGCAAA TTGCGGTCGT TCCTCGACAA CTAA
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| Protein sequence | MASKAKTLQV KDKEKDDKAA DAPEKDAADA PSPLLDLSDA AVKKMIKQAK KRGFVTFDQL
NEVLPSDTTS PEQIEDIMSM LSDMGINVSE SDEADSEDEN KEEAEDETDN ELVEVTQKAV
TEVKKSEPGE RTDDPVRMYL REMGTVELLS REGEIAIAKR IEAGREAMIA GLCESPLTFQ
AIIIWRDELN EGKIFLRDII DLDATYAGPD AKNNMNPALL GAPTGPDGQP LPAGDAAAAS
GEGDLGATVT APPAAPPSPT PFRAVRGAPA GAGDRDEKDQ TGAAEGEMEE DDFDNQMSLA
AIEAELKPKV VETFDKIADN YKKLRRLQEA DISNQLQSET LSPNQERRYR KLKDEIVVEV
KSLRLNQARI DSLVEQLYDI NKRLVSFEGR LLRLGDSHGV AREDFLRNYQ GSELDPKWIN
RVSKLSAKGW KNFVHHEKDR IKELRGEIQQ LAALTGLEIG EFRKIVHSVQ KGEREARQAK
KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK FSTYATWWIR
QAITRSIADQ ARTIRIPVHM IETINKIVRT SRQMLNEIGR EPTPEELAEK LGMPLEKVRK
VLKIAKEPLS LETPVGDEED SHLGDFIEDK NAVLPIDAAI QSNLRETTTR VLASLTPREE
RVLRMRFGIG MNTDHTLEEV GQQFSVTRER IRQIEAKALR KLKHPSRSRK LRSFLDN
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