Gene Nham_2861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2861 
Symbol 
ID4029417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3151988 
End bp3153253 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content62% 
IMG OID637971304 
Productdiguanylate cyclase 
Protein accessionYP_578089 
Protein GI92118360 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGGAACAA CCAGAAGAGG CGGGGCGGCG CGCGCTCCGA ACTCGCGGAT GCTGAGCGTA 
CCGACGCTGT GGGTCGTGTT CGTCGTGAAT TTCATGGCGT TGGGTCTGGT CTGGACCTAC
GTCATGCGGA GCTATCCGAC GCTCGTGGCC GCACGATATT GGGCCTCGGC TGCCTACGTC
GCCGCCTTTT TTACCGCGGT ATCGATGCTG CGCGGTCAAG TCGATTCAAT GCTGCCTCTG
GTGTTCGGGG GTGGCGGGTT GATCTTTGCG ATCTGCATTT ACACGATGGG GATTCAACGC
TTCTACGAGC GGCCCGTCTC CTGGCAAGCG ATGCTTGTCA CGGTCGGGTT GAGCGTCGCG
GGACTGGCCT TTTTCCTGTA CGTGCACGAC GATATCCGGA TGCGCATTTT CATCTATTCG
ACGGCTCAGG CAGTGCCGAT CGGCATGACG CTGAGGATCG TGCTGTCGCG CAGGGAAGGT
CGCATCAATT CGGGAGCCCA ACTCGCGGCC ATCGTTAGCG TGCTCATCAT TTGCGTCAGC
GCGGTCAGAT CGGTTTGTGC ATTTTTGAAC ATCGGCGGTG GAGTGTCCTA CGTCAACTTC
AACGGCCTTC AGGCGGCTTT GATTTTAGGT CTCGTGTTCC TGTCGATGAC CTGGAATTTC
GGTTTTCTGC TGATGGCGAT CGATCGGCTG CGCAATGAAG TTGCCGACCT CGCGCTGGTG
GATGACCTCA CCGGCGTCGC CAACCGAAGG CAGCTGCTGG GGCGGCTGGA GGAGGCGTGC
GCAATGTCGC AACGGAGCGG CGAACCTTTC GCGCTCCTCG TGATCGACCT CGACGGCTTC
AAGCAGATCA ACGACACCCA TGGTCACGCC GCCGGCGATG CCTGCCTGCG GCATTTCACG
CTGATGACGC AGATGCGGTT ACGGCCGGGC GATCTGCTGG CGCGAACCGG CGGTGACGAG
TTTTGCATCC TCCTGCCGAC CACAACGCTG CGCGAGGGCG CAATGATCGC GCGGCGCGTG
CTGGATGCGT GCCGTGAAGA CGCCGCCGGA TGCGCCGGCG CCGATGTCCC CATCGCGGCA
TCGATCGGCG TCGCTCAATG GACAAAGGAG ATCGGAAGCT GTTCGGAGCG TCTGCTCGCC
GCCGCCGATC ATGCCCTCTA CGCCGCCAAG AATCAGGGAA GAAACCGGTA TGCGAGCTGC
GATTCCGCAC CATCGATCGT TCCGGATTTC TCGCCGGAGC AGGCGGCGCT GGATCAGAAG
GCGTAA
 
Protein sequence
MGTTRRGGAA RAPNSRMLSV PTLWVVFVVN FMALGLVWTY VMRSYPTLVA ARYWASAAYV 
AAFFTAVSML RGQVDSMLPL VFGGGGLIFA ICIYTMGIQR FYERPVSWQA MLVTVGLSVA
GLAFFLYVHD DIRMRIFIYS TAQAVPIGMT LRIVLSRREG RINSGAQLAA IVSVLIICVS
AVRSVCAFLN IGGGVSYVNF NGLQAALILG LVFLSMTWNF GFLLMAIDRL RNEVADLALV
DDLTGVANRR QLLGRLEEAC AMSQRSGEPF ALLVIDLDGF KQINDTHGHA AGDACLRHFT
LMTQMRLRPG DLLARTGGDE FCILLPTTTL REGAMIARRV LDACREDAAG CAGADVPIAA
SIGVAQWTKE IGSCSERLLA AADHALYAAK NQGRNRYASC DSAPSIVPDF SPEQAALDQK
A