Gene Nham_2841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2841 
Symbol 
ID4030736 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3133607 
End bp3135808 
Gene Length2202 bp 
Protein Length733 aa 
Translation table11 
GC content60% 
IMG OID637971285 
Producthelicase RecD/TraA 
Protein accessionYP_578071 
Protein GI92118342 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.344384 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCGC AGCCGGAACC ATCAAGCCGG GAAGTTCTCG CGGGCCTTGT TGAGCGCGTC 
ACATACCACA ACGACGGGAA TGGCTACTGC GTTTTGCGGA TCAAGGCGCG CGGCCACCGC
GAACTGGTCA CTGTAGTCGG GCATGCCGCG GTGATCTCCG CTGGCGAGTG GATTACCGCA
TTGGGCGAAT GGGTCAATGA CCGAACCCAT GGCCAACAGT ACAGGGCGAA GTTCTTAAAG
ACCTCGGAAC CGACATCACT CGACGGTATC GAGAAATACC TCGGCTCCGG GATGATTCGC
GGCATCGGGC CAGTCTATGC CAAGAAGCTG GTGCGCGCCT TCGGTGAGAA GGTGTTCGAT
ACCATCGAGG CGGAGCCCGA ACGCTTGCGC GAGGTAACGG GCATCGGCCC GGTTCGGGCC
TACCGCATTG CAGCCGCTTG GGCCGAACAG AAGATCGTTC GCGAAATCAT GGTCTTCCTG
CACAGCAATG GCGTCGGCAC AGCGCGGGCG GTGCGCATTT ATAAGACCTA TGGCGCCGAC
GCCGTACAGG TCATGACCGA GAACCCCTAC CGCCTCGCGC GTGACATTCG CGGCATCGGC
TTCAAGACTG CCGACGCGAT CGCGATGAAA CTCGGCATCG AGAAGACCGC AATGATCCGG
ATTCGGGCCG GAATCTCCTA TGCGCTGACC GAGGCGATGG ACGAAGGGCA CTGCGGTCTG
CCGACGGATG AGCTGGTGCC GCTTGCCGAG AAGCTGCTTG AGGTCCCGGT GGAACTAGTG
CGCATCGCGC TTGATCTCGA ACGAACAGAA GGCACGGTCA TCGCGGACAG TGTAGGCGAA
ACGTCCTGCG TATTTCTGGC GGGCCTGCAT CGGGCGGAGC GCTCGATTGC CGAGCGGCTG
ATCCGGCTCG CGAACGGCAC ACTGCCCTGG CCCTGGATCA ATCCAGACAA GGCACTGCCT
TGGGTCGAGG AACGGATCGG GCTTACCCTT GCTGGGAGCC AGATGGCTGC GATCCGGCTC
GCATTGATGT CCAAAGCGTT GGTCATGACC GGCGGTCCTG GTGTCGGCAA GACCACCATC
GTCAAAGGTA TTCTCCGTAT TCTCGCAGCA AAGGGGGCAA GGCTCCTGCT ATGCGCGCCG
ACCGGCCGCG CCGCCAAGCG CATGACCGAG GCGACCGGTT TTGAGGCCAG GACGATCCAC
CGGCTGCTGG AGGTTGACCC CAAGGGCGGC GGCTTCAAGC GCGGCGAAGA CAATCCGCTC
GACTGCGACC TGCTTGTTGT CGACGAAGCC TCAATGGTAG ACGTCATGCT GATGCAGTCA
CTCATCAAGG CAGCGCCAGA CAAGTCTGCC CTTTTGATCG TCGGCGACAT CGACCAGCTT
CCTTCGGTTG GGCCAGGCCA AGTGCTGGCC GACGTCATTT CATCCGGTGC TGTGCCGGTG
GTGCGTCTCA CCGAGGTGTT CCGGCAGGCC GCGCAAAGCC GCATCATCAT CAGCGCACAT
CGCATCAATC ACGGGGTCAT CCCCGATCTC AGCCTGCCCG GCACGGATAG CGATTTCTAC
TTCGTGCAAG CGGACGATCT AGAAACCGTC GTACAGCGCA TTATCGAGTT GGTGAAGACA
CGGATCCCCA ATCGCTTCGG CCTCGACCCA ATTCGGGACA TTCAGGTTCT GTGTCCAATG
AACCGGGGCG GCGTCGGTGC GCGCTCGCTA AACATCGAAC TGCAGACGGC TCTGAACCCC
GCCGGCGAGC GCAAGGTCGA GCGCTTTGGT TGGACGTTCG CGCCCGGCGA CAAAGTGATG
CAGATCGAAA ACGATTACGA CAAGGAGGTC TATAACGGCG ACATCGGCTA TATCGACGAT
GTTAGTTTCG AAGACAGCGA ACTCACCGCA AGCTTCGACG GCCGCACGGT CATTTATGGG
TTTGGCGAGC TCGACACGCT GGTGCCGGCC TACGCAGCAA CCATCCATAA GAGCCAGGGT
TCGGAATACC TCGCCGTTGT GATCCCGGTG ATGACGCAGC ATTACACCAT GCTGCAGCGG
AACCTGCTCT ATACCGGCGT CACCAGGGGC AAGAAGCTGG TCGTGCTGGT CGGTCAGAAG
AAGGCCGTCG CCATCGCGGT TCGGAACGTT TCGGGGCGAA GGCGGTGGTC GAAGTTGAAC
GAGTGGCTGG TATCAAGAAC ATTGTCGATG CCGATAAGAT GA
 
Protein sequence
MKPQPEPSSR EVLAGLVERV TYHNDGNGYC VLRIKARGHR ELVTVVGHAA VISAGEWITA 
LGEWVNDRTH GQQYRAKFLK TSEPTSLDGI EKYLGSGMIR GIGPVYAKKL VRAFGEKVFD
TIEAEPERLR EVTGIGPVRA YRIAAAWAEQ KIVREIMVFL HSNGVGTARA VRIYKTYGAD
AVQVMTENPY RLARDIRGIG FKTADAIAMK LGIEKTAMIR IRAGISYALT EAMDEGHCGL
PTDELVPLAE KLLEVPVELV RIALDLERTE GTVIADSVGE TSCVFLAGLH RAERSIAERL
IRLANGTLPW PWINPDKALP WVEERIGLTL AGSQMAAIRL ALMSKALVMT GGPGVGKTTI
VKGILRILAA KGARLLLCAP TGRAAKRMTE ATGFEARTIH RLLEVDPKGG GFKRGEDNPL
DCDLLVVDEA SMVDVMLMQS LIKAAPDKSA LLIVGDIDQL PSVGPGQVLA DVISSGAVPV
VRLTEVFRQA AQSRIIISAH RINHGVIPDL SLPGTDSDFY FVQADDLETV VQRIIELVKT
RIPNRFGLDP IRDIQVLCPM NRGGVGARSL NIELQTALNP AGERKVERFG WTFAPGDKVM
QIENDYDKEV YNGDIGYIDD VSFEDSELTA SFDGRTVIYG FGELDTLVPA YAATIHKSQG
SEYLAVVIPV MTQHYTMLQR NLLYTGVTRG KKLVVLVGQK KAVAIAVRNV SGRRRWSKLN
EWLVSRTLSM PIR