| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2684 |
|---|
| Symbol | |
|---|
| ID | 4032382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 2952281 |
|---|
| End bp | 2953117 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637971136 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_577923 |
|---|
| Protein GI | 92118194 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.166046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG AGTCGACAGC CGACGCGAGT TCGGGAGCTA CCGCGTCCAG CAGCTCGTTT
TACGCGGCGA TGCGCATCCT GCCGCGCGCG CAGCGCGAGG CGATGTTCCA GATTTACACG
TTTTGCCGCT ATGTCGACGA TATCGCCGAT TCCGATAGCC CACGGCCGGA ACGGCGGGCC
GCGCTCCAGC AATGGCGTGA CGACATCGAC GCGCTCTATC AGGGGCGCGC GCCGGAGCGG
CTGCGCGATT ACGACGCTTC CGTGAGCGCC TTCGATCTGC GCCGCGAGGA TTTTCTCGCC
ATCATCGACG GCATGGAAAT GGACGTGCTG GCGGATATCC GCGCGCCTGA CGACGCCACG
CTCGATCTGT ATTGCGATCG CGTCGCCAGC GCGGTCGGAC GGCTGTCGGT CCGGGTGTTC
GGATTGCCCG AGCAGGATGG CATCCTGCTC GCGCATCATC TCGGTCGCGC ACTGCAGTTG
ACCAATATCC TGCGCGATCT CGATGAGGAT GCGGCGCTTG GACGGCTATA TCTGCCGCGC
GAGGGCCTGC TCCGCGCCGA CATCGGCAGT TTCGATCCGG CCGCCGTGAT ATCGAACCCG
GCGCTGCCGC AGGTCTGTGC GCCGCTGGTG GAGCGGGCGC AGGCGCATTT CGTCGAATCG
GACGAGATCA TGAATCGCAA CCCGCGCCGT GCCGTGCGCG CGCCCCGCAT TATGTCCAGA
TATTATCACG CCATTCTGGA TATGCTGGAG CATCGCGGTT TTCAGCTGCC GCGCTCGCCC
GTTCACCTCA GCCAGGCGGC GAAGATCGCC ATCGTCCTCC GGTATGCGTT AATCTGA
|
|---|
| Protein sequence | MTIESTADAS SGATASSSSF YAAMRILPRA QREAMFQIYT FCRYVDDIAD SDSPRPERRA
ALQQWRDDID ALYQGRAPER LRDYDASVSA FDLRREDFLA IIDGMEMDVL ADIRAPDDAT
LDLYCDRVAS AVGRLSVRVF GLPEQDGILL AHHLGRALQL TNILRDLDED AALGRLYLPR
EGLLRADIGS FDPAAVISNP ALPQVCAPLV ERAQAHFVES DEIMNRNPRR AVRAPRIMSR
YYHAILDMLE HRGFQLPRSP VHLSQAAKIA IVLRYALI
|
|---|
| |