Gene Nham_2453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2453 
Symbol 
ID4029287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp2713534 
End bp2714475 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content65% 
IMG OID637970912 
Productlytic transglycosylase, catalytic 
Protein accessionYP_577703 
Protein GI92117974 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATACG CGTTGGCTAT GATGCTGATG ATGCCGCATG TCGCCTTTGC GCAAGTCGGC 
GCGGAGACGG CGGCCGATCC CGGACCTGCC GCCAAGACAG ATCCCGTCAA GACAGATCCC
GTCAAGACAG ACCAAGACAC GCGCGAATCG ATCTGCCTGA TGGTCGAATC GGCTGCGAAG
GCCGAGAGCT TGCCGCTGGA ATTCTTCGCG CGCGTGATCT GGCAGGAGAG CCGGTTTCAG
TCCGATGCCG TTGGCCCGTT GACCCGCAGC GGCCAGCATG CGGAGGGAAT CGCGCAGTTC
ATGCCGGGAA CGGCGAGTGA GCGGCGGCTG CTCGACCCGT TCGATCCGGT GCAGGCCCTG
CCGAAATCGG CCGAGTACCT GAACGAGTTG CGCGGGCAAT TCGGCAATCT CGGACTGGCG
GCCGCAGCCT ATAATGCCGG GCCGCGCCGC GTGCAGGACT GGCTTGATGG CAAGGGATCG
ATGCCGACTG AGACGCGCAA CTACGTTGTC GCGATCACGG GATCGCCGAT CGAGGACTGG
GTTGCCGCCG GCAAAAGCGG TAAACCGCCA GCGCAGCCAC CGGCGACGAA CTGCCGCGAG
TTGATGGCGC TCCTGAAGCG CGCGCCCAAT CCGTTTGTCA CGGGGCTTGA ACAGCACGTG
AAGCTCGGTG CCGACAAGCC ATGGGGCGTG CAGCTTGCTG CCGGCTTCAG CCGCGTCCGC
GCCATGGCCA TGTATGCACG AGCCATCAGG CGGCTCGTCG CCGTGATCGG CGACCGCGAT
CCAAGTCTGC TAGGCTCGGT ATGGCGCAGC CGCGGCACCC GGACGTTCTA TCAGGTGCGG
ATCGGAGCCG ATACGCGCGC GGAAGCCGAT GGCCTCTGCA ACCGGATCAG GCGCGCCGGC
GGCGCCTGTC TCGTACTGCG AAATATGCGT GTGAGAGGTT GA
 
Protein sequence
MQYALAMMLM MPHVAFAQVG AETAADPGPA AKTDPVKTDP VKTDQDTRES ICLMVESAAK 
AESLPLEFFA RVIWQESRFQ SDAVGPLTRS GQHAEGIAQF MPGTASERRL LDPFDPVQAL
PKSAEYLNEL RGQFGNLGLA AAAYNAGPRR VQDWLDGKGS MPTETRNYVV AITGSPIEDW
VAAGKSGKPP AQPPATNCRE LMALLKRAPN PFVTGLEQHV KLGADKPWGV QLAAGFSRVR
AMAMYARAIR RLVAVIGDRD PSLLGSVWRS RGTRTFYQVR IGADTRAEAD GLCNRIRRAG
GACLVLRNMR VRG