| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2438 |
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| Symbol | |
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| ID | 4029272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2699777 |
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| End bp | 2702149 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637970897 |
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| Product | ribonuclease R |
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| Protein accession | YP_577688 |
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| Protein GI | 92117959 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.404679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGGCAA GAACGGCTGA CGTGAGCAAA CTGCGCGACA AGCGTTTTCC AGACCGCGAG
ACCATCGTCG CCTTCATTCG CGCCCATCCG GGCCAAGCCG GAACACGCGA GATCGCCCGC
GAGTTCGGCC TGAAGAATGC GGATCGCATC GCACTCAAGC AAATCCTGCG CGATCTCGCG
GACGACGGCA CGATCGTCAA ACGAGGCCGC AAGCTGCAGC AGGCGGAAAC GCTGCCGCCG
ACGCTGATGG CCGATATCAC CGGACGCGAT AGCGACGGCG AACTTCTCGC GACGCCCACC
GAATGGGACG AGGAAGCAGG CCCCCCTCCA AAAATCCGCA TCCATGTGCC GCGCCGCATC
AAGCCCGGCA CCGCGGCCGG CGTCGGCGAC CGCGCGCTGC TGCGCATCGA AGCGATGGAG
CCCGACGAAT CCGCACGCTT CCGTGCTCGC GTCATCAAGG TGATCGATCA CACCCGCGCG
CGTATCCTCG GCATTTATCG CGCCTTGCCT CAGGGCGGCG GCCGCCTGGT GCCGGTCGAC
AAGAAACAGG CCGGCCGCGA GTTGAACATC GCGAAAGCCG ACAACGCCGG CGCGGAGGAC
GGTGATCTCG TCAGCGTCGA ACTTGTGCGT ACCCGCAGTT TCGGTCTTGC GTCGGGCAAG
GTGAAGGAGC GGCTCGGCTC GCTCTCGACC GAAAAGGCCG TCAGCCTGAT CGCGATCCAC
GCCCATGACA TTCCGCAGGC GTTTGCGCCG GCTGCCTTGC GTGAGGCCGA GGCTGCGAAG
CCCGCGACCC TGCGGCACCG CGAAGACTGG CGCGCGTTGC CGCTCGTGAC CATCGACCCG
CCCGATGCCA AGGATCACGA CGACGCGGTT CACGCCGCGC CAGACGACGA TCCAAACAAC
AAGGACGGCG CCATTGTCAC CGTCGCCATC GCCGACGTCG CCTATTACGT GCGGCCTGGA
TCGTCACTCG ATCATGATGC GCTGACGCGC GGCAACTCGG TCTATTTCCC CGATCGTGTG
GTCCCGATGC TGCCGGAGCG CATCTCCAAC GATCTCTGCT CGCTGGTGCC CGGCGAAGCG
CGCGGCGCCC TGGCCGTGCG CATGGTGATC GGTCCCGACG GCCGCAAGCG TTCGCATACG
TTTCATCGCA TCCTGATGCG CTCGGCGGCG AAGCTGAACT ACGCGCAGGC GCAGGCCGCG
ATCGACGGCA ACCCCGATGA TGCCACCGGC CCCCTGCTCG AACCGATCCT GAAACCGCTT
TATGCGGCCT ATACGCTGGT GAAGCGTGCG CGCGACGAGC GCGATCCGCT CGATCTCGAG
CTGCCCGAGC GCAAGATTCT CCTGAAGACG GACGGCACGG TTGACCGCGT CGTCGTGCCG
GAGCGTCTCG ACGCTCACCG CCTGATCGAG GAGTTCATGA TCCTCGCCAA CGTCGCCGCC
GCGGAGATGC TGGAGAAGAA GGGCCTGCCG CTGATCTATC GGGTCCATGA CGAGCCGACG
GTGGAGAAAG TCCACAACCT TCGGGAGTTC CTGAAAACGC TCGACATGTC CTTCGCCAAG
AGCGGCGCGC TGAGGCCCGA GTTGTTCAAT CGCGTCCTCG ATCAGGTCAA GGGCTACGAC
TCCGAGTCGC TGGTGAACGA GGTGGTGCTG CGGTCGCAGG CGCAGGCTGA ATATTCTGCG
GAGAACTACG GCCACTTCGG CCTCAACCTG CGGCGCTACG CGCATTTCAC CTCTCCGATC
AGGCGGTACG CGGACCTGAT CGTGCACCGC GCCCTGATCC GGGCGCTCGG CCTTGGCGAC
GGCGCGCTGC CGGACGCCGA GACCCCCGAG ACGCTGGCTG AAATCGCCGC GCAGATTTCC
GTCACCGAAC GCCGCGCCAT GAAGGCGGAA CGCGAGACCG CCGACCGCCT GATCGCGCAT
TTCCTCGCCG ACCGCATCGG CAATATCTTC GAGGGCCGGA TTTCGGGGGT GACCCGCGCG
GGCCTGTTCG TAAAACTGAC CGATACCGGC GCAGACGGGT TGATCCCGAT CCGGTCCCTG
GGCACGGAAT ATTTCAACTA CGACGAGGCC CGCCACGCGC TGGTCGGCTC GCGCAGCGGT
TCCATGCACA AGCTTGGTGA CGTGGTCGAG GTTCGTCTGG TAGAAGCTTT ACCCTTGGCT
GGCGCCCTGC GTTTCGAACT CCTATCTGGG GGACATGCCG GGCCACGCGA TCACCGCGCG
CGCGGCGGCC GGAACACGAA GGGGCAGCGC GGTCCGCAGG ACACGCGGCA TCCCGGCGTC
CATTCAAAGG CCCATCCGGG CCGCAAACCG CGCAAGGCAT CGCGCAAGCC GGGCAAGAGC
AAGGCCGGCA AACCGAAGAA GGGCAAATCA TGA
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| Protein sequence | MLARTADVSK LRDKRFPDRE TIVAFIRAHP GQAGTREIAR EFGLKNADRI ALKQILRDLA
DDGTIVKRGR KLQQAETLPP TLMADITGRD SDGELLATPT EWDEEAGPPP KIRIHVPRRI
KPGTAAGVGD RALLRIEAME PDESARFRAR VIKVIDHTRA RILGIYRALP QGGGRLVPVD
KKQAGRELNI AKADNAGAED GDLVSVELVR TRSFGLASGK VKERLGSLST EKAVSLIAIH
AHDIPQAFAP AALREAEAAK PATLRHREDW RALPLVTIDP PDAKDHDDAV HAAPDDDPNN
KDGAIVTVAI ADVAYYVRPG SSLDHDALTR GNSVYFPDRV VPMLPERISN DLCSLVPGEA
RGALAVRMVI GPDGRKRSHT FHRILMRSAA KLNYAQAQAA IDGNPDDATG PLLEPILKPL
YAAYTLVKRA RDERDPLDLE LPERKILLKT DGTVDRVVVP ERLDAHRLIE EFMILANVAA
AEMLEKKGLP LIYRVHDEPT VEKVHNLREF LKTLDMSFAK SGALRPELFN RVLDQVKGYD
SESLVNEVVL RSQAQAEYSA ENYGHFGLNL RRYAHFTSPI RRYADLIVHR ALIRALGLGD
GALPDAETPE TLAEIAAQIS VTERRAMKAE RETADRLIAH FLADRIGNIF EGRISGVTRA
GLFVKLTDTG ADGLIPIRSL GTEYFNYDEA RHALVGSRSG SMHKLGDVVE VRLVEALPLA
GALRFELLSG GHAGPRDHRA RGGRNTKGQR GPQDTRHPGV HSKAHPGRKP RKASRKPGKS
KAGKPKKGKS
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