| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2437 |
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| Symbol | |
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| ID | 4029271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2696986 |
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| End bp | 2699796 |
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| Gene Length | 2811 bp |
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| Protein Length | 936 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637970896 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_577687 |
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| Protein GI | 92117958 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0547767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGCCC CGAAACCGTC CGCGCATCTC TCGCGGAACC GGCCTCGAGT TTTCCCATTA
AGCTATTGGA ATAACATGAA TATCGTCATT GTTGAGTCGC CTGCAAAGGC CAAGACGATC
AACAAGTATC TAGGCGCTTC CTACGAGGTG CTGGCTTCGT TCGGCCACGT CCGCGACCTC
CCCGCTAAAA ACGGATCGGT CGATCCGGAT GCCAATTTCC AGATGATCTG GGAGGTCGAT
CCCAAAGCCG TCGGCCGACT CAACGACATC GCCAAATCGC TCAAGGGCGC CGACAAGCTC
ATCCTCGCCA CCGACCCCGA TCGCGAGGGC GAGGCGATCT CCTGGCATGT GCTCGAGGTG
CTGAAGCAGA AGCGCGCGCT GAAGGACCAG AAGATCGAGC GCGTCGTCTT CAACGCCATC
ACCAAGCAGG CCGTCACCGA CGCGATGAAG AATCCTCGCC AGATTGACGG CGCGCTGGTC
GACGCCTACA TGGCGCGCCG TGCGCTCGAC TATCTGGTCG GCTTCACCCT CTCCCCGGTG
TTGTGGCGCA AGCTGCCCGG CGCCCGCTCG GCCGGGCGCG TGCAGTCGGT CGCCTTGCGG
CTGGTCTGCA GCCGCGAGAT CGAGATCGAG AAATTCGTCC CGCGCGAATA CTGGTCGCTG
ATCGCGACCC TGGCGACGCC GCGCGGCGAC ACCTTCGAAG CTCGCCTGGT CGGCGCCGAC
GGCAAGAAAA TTCAGCGGCT CGATATCGGC AGCGGCGCCG AGGCCGAGGA TTTCAGGAAG
GCGATCGAGG CCGCCAATTT CATCGTCTCG ACCGTCGAGG CGAAACCGGC GCGCCGCAAT
CCGCAGGCGC CATTCACCAC TTCGACGCTG CAGCAGGAGG CGAGCCGCAA GCTCGGCTTC
GCACCCGCGC ATACGATGCG GATCGCGCAA CGACTCTATG AAGGCATCGA CATCGGCGGC
GAGACCACCG GCCTCATCAC TTACATGCGA ACCGACGGCG TGCAGATCGA CGGCTCGGCG
ATCACGCAAG CGCGCAAGGT GATCGGCGAG GATTATGGCA ACGCCTACGT GCCGGACGCA
CCGCGCCAGT ATCAGACCAA GGCCAAGAAC GCGCAGGAAG CCCATGAGGC GATCCGCCCG
ACCGACCTGT CGCGCCGTCC CGCGGACATG AAGCGGCGTC TCGATGCCGA TCAGGCGAGA
CTCTATGAGC TGATCTGGAT CCGGACCATC GCCAGCCAGA TGGAATCGGC GGAACTGGAA
CGCACCACCG TCGACATCGC GGCCAGGGCC GGATCGCGCG TGCTGGAACT GCGCGCCAGC
GGCCAGGTCA TCAAGTTCGA CGGCTTCCTG GCGCTATATC AGGAAGGCCG CGACGACGAG
GAAGACGAGG ACAGCCGTCG TCTTCCCGCC ATGAGCGACG GCGAAGCGTT GAGGCGCGAG
AACCTCAGCG TCACCCAGCA TTTCACCGAA CCGCCACCGC GCTTCTCGGA AGCCTCGCTG
GTCAAGCGCA TGGAGGAGCT CGGCATCGGC CGACCCTCGA CCTATGCCTC GATCCTGCAG
GTGCTCAAGG ATCGCGGCTA CGTCAAACTC GAGAAGAAAC GGCTCTATGG CGAAGACAAG
GGCCGCGTCG TCGTCGCGTT CCTGGAGAAT TTCTTTGCGC GCTACGTCGA ATACGACTTC
ACCGCCAACC TCGAGGAGCA GCTCGATCGC ATCTCGAATA ACGAGGTGTC GTGGCAGCAG
GTCCTGAAGG ATTTCTGGAA CGACTTCATC GGCGTCGTCA ATGAGATCAA GGACGTCCGC
GTTTCCGAAG TGCTCGACGT GCTCGACAAC ATGCTCGGGC CGCACATCTA TGCGCCGCGC
GAGGATGGCG GCGACCCCCG CCAGTGCCCC ACCTGCGGGA CCGGAAAACT GAACCTCAAG
GCCGGAAAGT TCGGCGCGTT CGTCGGCTGC TCCAACTACC CGGAATGCCG CTACACCCGT
CCCCTCGCCG CCGATGGCGA GGCCGGCGGC GACCGCATTC TCGGCAAAGA TCCGGAGAGC
GGTCTCGATG TAACGGTGAA GTCCGGCCGC TTCGGACCCT ACATCCAGCT CGGCGAGCCC
AGCGATTATG GCGAGGGCGA AAAGCCGAAA CGCGCGGGCA TTCCGAAGAA CACGTCGCCC
GCTGACATGG AGCTGGACCT CGCCGTGAAG CTCCTTTCGC TGCCGCGTGA GATCGGTAAG
CATCCGGAGA CCGGCGAGCC GATCACCGCC GGCATAGGCC GCTTCGGTCC GTTCGTACGG
CATGAAAAAA CCTATGCGAG TCTTGAAGCC GGCGACGAGG TGTTCGACAT CGGCCTCAAC
CGCGCGGTGA CGCTGATTGC AGAGAAAATC GCAAAGGGGC CGAGCCGGCG CTTTGGCGCC
GATCCCGGCA AGCCGCTCGG CGAGCATCCG ACACTCGGTT CCGTCGCGGT GAAGAGCGGA
CGTTATGGCG CCTATGTCAC GGCAGGCGGC GTCAACGCGA CCATCCCGAG CGACAAGACC
CAGGACACCA TCACCCTGCC CGAGGCCATC GCGCTGATCG ACGAACGCGC CGCCAAGGGC
GGCGGCAAGC CGAAGCGCGC GGCAAAGAAG GCCAAGTCCG CCGGGACTGA AAGGACCGGC
AAGGCCGGCG CCGTGGCAGC AAAGCCGGCC AAAAAGGCGG CTGCAAAACA GGCCTCCGTC
AAGCCGAAGT CCGCCGCGGT GAGCAAGGCG CGCGGCTCGA TCGCGGCAGT CAAACCGCCG
GCCAAGGCTG AAAAAGCGCC CGCAAAGAAG AGTGCTGGCA AGAACGGCTG A
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| Protein sequence | MFAPKPSAHL SRNRPRVFPL SYWNNMNIVI VESPAKAKTI NKYLGASYEV LASFGHVRDL
PAKNGSVDPD ANFQMIWEVD PKAVGRLNDI AKSLKGADKL ILATDPDREG EAISWHVLEV
LKQKRALKDQ KIERVVFNAI TKQAVTDAMK NPRQIDGALV DAYMARRALD YLVGFTLSPV
LWRKLPGARS AGRVQSVALR LVCSREIEIE KFVPREYWSL IATLATPRGD TFEARLVGAD
GKKIQRLDIG SGAEAEDFRK AIEAANFIVS TVEAKPARRN PQAPFTTSTL QQEASRKLGF
APAHTMRIAQ RLYEGIDIGG ETTGLITYMR TDGVQIDGSA ITQARKVIGE DYGNAYVPDA
PRQYQTKAKN AQEAHEAIRP TDLSRRPADM KRRLDADQAR LYELIWIRTI ASQMESAELE
RTTVDIAARA GSRVLELRAS GQVIKFDGFL ALYQEGRDDE EDEDSRRLPA MSDGEALRRE
NLSVTQHFTE PPPRFSEASL VKRMEELGIG RPSTYASILQ VLKDRGYVKL EKKRLYGEDK
GRVVVAFLEN FFARYVEYDF TANLEEQLDR ISNNEVSWQQ VLKDFWNDFI GVVNEIKDVR
VSEVLDVLDN MLGPHIYAPR EDGGDPRQCP TCGTGKLNLK AGKFGAFVGC SNYPECRYTR
PLAADGEAGG DRILGKDPES GLDVTVKSGR FGPYIQLGEP SDYGEGEKPK RAGIPKNTSP
ADMELDLAVK LLSLPREIGK HPETGEPITA GIGRFGPFVR HEKTYASLEA GDEVFDIGLN
RAVTLIAEKI AKGPSRRFGA DPGKPLGEHP TLGSVAVKSG RYGAYVTAGG VNATIPSDKT
QDTITLPEAI ALIDERAAKG GGKPKRAAKK AKSAGTERTG KAGAVAAKPA KKAAAKQASV
KPKSAAVSKA RGSIAAVKPP AKAEKAPAKK SAGKNG
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