| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2307 |
|---|
| Symbol | |
|---|
| ID | 4029679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 2562977 |
|---|
| End bp | 2564818 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637970768 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_577559 |
|---|
| Protein GI | 92117830 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGC CCGCCTCCGC ATTGCCGGTC GAAGCGCCTG ACGCCTTTCT CGGCGTGTCG
CATTCGGCGA CCGGGCGTCT GTGGCGCGAT CGCCTCGATG CGCGGGGCGC GGCGCGCGCG
TTGGCGATCG CCCAGCGCCA CCAGTTGCCG GAGATGCTGG CGCGGGTGAT TGCCGGGCGG
GGCGTCGAGG TCGATGCGGT CGCGGATTTT CTCGATCCGA CCATCCGCCG GCTGATGCCC
GATCCCTTCA CCGTGACGCA GATGGAGGCG GCAGCCAAGC GGTTGGCGGA CGCCGCGATG
CGCGGTGAGA CGGTCGCGAT CTTCGGCGAT TACGATGTCG ACGGCGCAAC CTCGGCGGCG
CTGCTCGCCT GGCATCTGCG CCATTGCGGG CTGGATCCGC TGATCCATAT TCCTGATCGG
ATTTTTGAGG GCTACGGCCC GAATGTCGAA GCCATCAACG CGCTTGCAGC CAGGGGCGCA
ACGCTGCTGG TGACGGTCGA CTGCGGGACC ACGAGCATCG AGCCGCTGGC GGTTGCCAAA
CAGCAGGGCA TGTCGGTCGT GGTGATCGAT CATCACCAGT GCGGCGACGA TCTGCCCGAG
GTCGAGGCGC TGGTGAATCC GAACCGGCCG GACGATCTCT CCGGGCTCGG ACATCTCGCC
GCCGTCGGTC TCGTATTGGT GACGCTGGTC GCGTTGAACC GCGAACTGCG TCAGCGCGGC
TTCTGGACCG ACGAACGGCC GGAGCCGGAT CTCCTGAACA TGCTGCATCA CGTCGCGCTC
GGAACGGTCG CCGATGTCGC GCCGCTGACC GGCCTCAACC GTGCCTTCGT CGCGAAGGGG
TTGATCGCGC TACGCCGCCG CGATCATGTC GGCCACACCG CACTGATGGA TGTCGCACGG
CTGAACGGCC CGCCGGAAGC CTGGCATCTC GGTTTCATGC TGGGACCGCG CATCAATGCA
GGCGGCCGTA TCGGACGCGC CGATCTCGGC GTGCGGTTGC TGCTGGAAGG CGATGTCTCG
GAGGCCGCGC GGATCGCGGC CGAACTCGAT CGCCTCAACG TCGAGCGCCG CGTGATCGAG
CAGGCCGCCG AGGCGCAGGC CGAAGCCGAA GCGCTGGCCT CGCTCGGTCT CGAGGACAAA
GGGGCCGTCA TCGTCACGGC GTCCGAGGGT TGGCATCCCG GCGTGGTCGG TCTCGTCGCG
TCGCGGTTGA AGGACAAGTT TTCCCGGCCC GCCTTCGTTG TGGCGCTGGA GCCGGGTGGT
ATCGGCACCG GATCGGGCCG CTCCATCGGC GGCGTCGATC TCGGCAAGGC GGTGCGGCAG
GCCGTGACCG ACGGCGTGCT GCTCAAGGGC GGCGGTCACG CCATGGCGGC GGGCGTTACG
CTGCGCAAGG AGCGGCTGGC GGAATTCCGC GCCTACATGG AAAAGGCACT CGCCGCCGAT
GTCGCGCGGT CGCGTCATGT CCGCGAACTC TTCATCGATG GCGCAGTCAG CGCGCGGGCG
GTGACGCCCG AGTTCGTGGC GACGCTCAAT CGCGCCGGGC CGTTCGGCGC GGGCAATCCG
GAGCCGGTGG TGGCTCTGCC GTCGCACCAG TTGATCTATG CCGACGAGGT CGGGCAGGCG
CATCTTCGGC TGCGATTCAA ATCCGGTGAC GGCGCTATCG TGAACGGCAT CGCGTTCCGC
GCGATCGGCC AACCGCTCGG CAACGTCCTG ACGCAGATGC GCGGCCAGCC GCTGCATGTG
GCGGGATCGC TGGCGGTGGA CCGCTGGCAG GGCGCGGAGC GCGTGCAGTT GCGCGTCAGC
GATGTGGCCT TGCCGACGGT CCAGCCGGAG ATCATTCGCT GA
|
|---|
| Protein sequence | MTLPASALPV EAPDAFLGVS HSATGRLWRD RLDARGAARA LAIAQRHQLP EMLARVIAGR
GVEVDAVADF LDPTIRRLMP DPFTVTQMEA AAKRLADAAM RGETVAIFGD YDVDGATSAA
LLAWHLRHCG LDPLIHIPDR IFEGYGPNVE AINALAARGA TLLVTVDCGT TSIEPLAVAK
QQGMSVVVID HHQCGDDLPE VEALVNPNRP DDLSGLGHLA AVGLVLVTLV ALNRELRQRG
FWTDERPEPD LLNMLHHVAL GTVADVAPLT GLNRAFVAKG LIALRRRDHV GHTALMDVAR
LNGPPEAWHL GFMLGPRINA GGRIGRADLG VRLLLEGDVS EAARIAAELD RLNVERRVIE
QAAEAQAEAE ALASLGLEDK GAVIVTASEG WHPGVVGLVA SRLKDKFSRP AFVVALEPGG
IGTGSGRSIG GVDLGKAVRQ AVTDGVLLKG GGHAMAAGVT LRKERLAEFR AYMEKALAAD
VARSRHVREL FIDGAVSARA VTPEFVATLN RAGPFGAGNP EPVVALPSHQ LIYADEVGQA
HLRLRFKSGD GAIVNGIAFR AIGQPLGNVL TQMRGQPLHV AGSLAVDRWQ GAERVQLRVS
DVALPTVQPE IIR
|
|---|
| |