Gene Nham_2177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2177 
Symbol 
ID4032673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp2420128 
End bp2422785 
Gene Length2658 bp 
Protein Length885 aa 
Translation table11 
GC content63% 
IMG OID637970635 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_577430 
Protein GI92117701 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCAGCGGA TGCGGTCATC CTCGCTGTCG ATCGGCCAGA TCACCTTCGG CGGATTTTTG 
CTGGTGCTGG CGATCATGGT GATAACCAGC GTGGCCAACG TCGTCGCGAC GCGCCATCTC
GACAATACCT TCGCCGAGTT GCAGCGGCTG GACAGCGTCG GCGACCTCGC CGAGGAAATC
GACCGCCGTA TGAACGAATT GCGGCTGGCG GCGCGAGACT ACGTCACCGA TCCAGGTGCG
CAGTCCAGCC GGGTGTGGGG GGCCGCATCG TCGCTGAACG AGTTGCTGAA GAAGACGCGT
ATCAAGCTTG CGCCGGAACA GCAGGAGATG ATCGACGGCG TCACGACGCG GCTGGAGGCC
TATCGCAGGG GCATAGAGCG GGTGACGGAC CTGATCGCAA GCCGCGCGGA GCTGATCGAG
ACCCTGCCGC CGCTGCGTGA AAAACTCGAA ACAGTAATCG AGCAGGCGGC CGATCAGTCG
GCCTCAAAAA CACTGTTTCG AGCCCAGAGC GATGTCGCCG CCGCACTGCT CGGGCATGAT
CCCACCACCG CGGAGCGGTC GGCGGAAAAG ATGCGCGCCA TCCCCATCGG CGAGCCCGCA
GTCCGTGCCG CCGTTGAGGC CTACGCCGAT GCCGTGATTG CGATATCGCT GCGGGAGCGT
CAGATCGCCG ATCTCGACAG GGATGTGCTG GGCACCGAAG GCCGGATGAT CGGGCAGGTC
ACGGAGTTGT TGCGCGAACT CAGCACGCAA CGCGAGCAGG TGCTGTCGCA CGACTTCGCG
CGAACGCTGG CCGAAACCAA ATGGCAGAGC ATCGTTCTCG GCAGCGTAGG AATATTGATT
GGCCTGCTTG CGGCGATGTT CGTGGTGCGA CGAACGATCC GGCCCTTAAA GGCGATCGCG
AGGGCGATCC GGAAGTTGGC TGGCGGTGAA AAGGAGACGT CGATTCCCGC AACCGACGTC
GATAACGAAA TCGGCGATAT CGCCCGCGCC GCCGAAGTGT TTCGCCGGAC GCTTGCTGAA
GCGGACTCGG CGCGGGAAGC TGCCGTTCGC GCGCTTGCCG AGCAGCGTCT TGCCGAGGAG
AGCTACCGCA AGCTGTTCGA AGGTTCGGTC GATGGCATCT ATGTTACGAC GCCGGGTGGT
CAACTGCTCG ATGCCAACCC GGCGCTGGCG CGGATAATCG GCTATGACAC CCCGGACGAT
CTGATGCGCG ATATCGGTGA CAGCGCGCAA ACGATCTACG TCGATCCGTA TGCGCGCGCC
GAATACCAGT TGCGGATGGA ACGCGACGGG ACCGCCCGCG GGTTCGAGTA TCAGGTGCGC
CAGCGCGATG GCGGCATTCT CTGGCTCTCC GACAGCGCGA CAGCGGTCCG CGATGAGAAT
GGCCGCATCG TCCGCTATGA AGGGGTGGTT CGCGACATCA CCGAGCAGCG GCGCGCCGAA
GAGGCGATCG CAGAAGGACG GCGCGTGCTG CAACTCGTGA TCGACACTGT GCCCGCGATG
ATCAACGTCA AGAACGCCGA CCTGCGTTAC GTCCTGATGA ATCGCTACAT GGCGGGCATT
TTCGCGATCG AACCGGCGGA TGCGATCGGG CGAACGACGA GCGACCTGAT GTCGCGTTAC
GGTGCGGCAA AGACCGACGA GAACGACAGG CGGGTTCTTC AGAGCGGCAA GGAGCTTGGC
TTCTACGAAG AAGAGTATGA GGATGCGTTG GGCACGATGC GGCAATGGCT GGTCAACAAG
CTGCCGATCC GCGGCGCCGA CGGCCGCGTC GAGAACATCG TCACGGTCGC GCTTGATATC
GGTGATCGTA AACGCAACGA ACAGGAAATG CGGCAGGCCA AGGACGCGGC CGAGACGGCG
CTACGCAACC TGCGCGAAAC TCAGAACTCG CTGATCGAGG CGGAGAAGCT CGCGGCGCTC
GGTCGTCTCG TGGCGGGCGT CGCTCACGAG GTCAACAATC CGGTCGGTAT CAGCCTGACG
GTGGCCTCGT CGCTGGAGCG CAAGATTGCT CTGTTCGCCG AGGAAGTCGC GCGCGGGGGG
TTGCGGCGTT CAAGCCTGAA CGATTTCGTC GCAACCAATC GCGATGCTGC ATCGCAGCTT
GTCGCCAACC TCAATCGCGC CGCCGAATTG GTCCAGTCAT TCAAGCAGGT TGCCGCCGAC
CGCAGCTATT CGGACAAGCG GACCTTCGAC CTCGGTGAAC TCACCGAGCA GGTCGTCATG
AGTCTGCGTC CCGGCCTGCG CAAGCACAAT GTGACGCTGA CGGTCGATTG CGAACCCAAT
CTCTCGATGA ACAGCTACCC CGGGCCTTAC GGCCAGGTGC TGACCAATCT TTTCCTTAAC
TCGCTGGCGC ATGCCTTTCC GGATGGTAAG GGCGGCGCGG TCGATATCAA TGTGCGGGGA
GCCGGCCGGG ACAATGTTGA AATCCTGTTT TCCGACAACG GCTGCGGCAT GAGCATCGAT
GTGCGGCGCA AGGCGTTCGA CCCGTTTTTC ACGACGCGGC GCGATCAGGG CGGCACCGGT
CTCGGTCTGC ACATCGTCTA CAACATCGTG ACGAACCGTC TCGGCGGGCG CCTCGATCTC
GACTCCATAT CCGGGGAGGG GACGCGGGTT CACATCGTTT TGCCGCGCGT CGGGCCGATG
GAGCTGGCTG CGGAGTAG
 
Protein sequence
MQRMRSSSLS IGQITFGGFL LVLAIMVITS VANVVATRHL DNTFAELQRL DSVGDLAEEI 
DRRMNELRLA ARDYVTDPGA QSSRVWGAAS SLNELLKKTR IKLAPEQQEM IDGVTTRLEA
YRRGIERVTD LIASRAELIE TLPPLREKLE TVIEQAADQS ASKTLFRAQS DVAAALLGHD
PTTAERSAEK MRAIPIGEPA VRAAVEAYAD AVIAISLRER QIADLDRDVL GTEGRMIGQV
TELLRELSTQ REQVLSHDFA RTLAETKWQS IVLGSVGILI GLLAAMFVVR RTIRPLKAIA
RAIRKLAGGE KETSIPATDV DNEIGDIARA AEVFRRTLAE ADSAREAAVR ALAEQRLAEE
SYRKLFEGSV DGIYVTTPGG QLLDANPALA RIIGYDTPDD LMRDIGDSAQ TIYVDPYARA
EYQLRMERDG TARGFEYQVR QRDGGILWLS DSATAVRDEN GRIVRYEGVV RDITEQRRAE
EAIAEGRRVL QLVIDTVPAM INVKNADLRY VLMNRYMAGI FAIEPADAIG RTTSDLMSRY
GAAKTDENDR RVLQSGKELG FYEEEYEDAL GTMRQWLVNK LPIRGADGRV ENIVTVALDI
GDRKRNEQEM RQAKDAAETA LRNLRETQNS LIEAEKLAAL GRLVAGVAHE VNNPVGISLT
VASSLERKIA LFAEEVARGG LRRSSLNDFV ATNRDAASQL VANLNRAAEL VQSFKQVAAD
RSYSDKRTFD LGELTEQVVM SLRPGLRKHN VTLTVDCEPN LSMNSYPGPY GQVLTNLFLN
SLAHAFPDGK GGAVDINVRG AGRDNVEILF SDNGCGMSID VRRKAFDPFF TTRRDQGGTG
LGLHIVYNIV TNRLGGRLDL DSISGEGTRV HIVLPRVGPM ELAAE