Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_2077 |
Symbol | |
ID | 4031251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 2309875 |
End bp | 2311995 |
Gene Length | 2121 bp |
Protein Length | 706 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637970534 |
Product | penicillin-binding protein 1C |
Protein accession | YP_577334 |
Protein GI | 92117605 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.145944 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCAT CCGACACCAC GGCACCGACG ATACAACCGC GCCGCTGGCG GCGGGTGAAG CTGGCAGCGG CGGTCGTCGC GGTCATAACC GTCGTAACCG CCGGCGCGAT TGCGAGCTGG ATCGTTTCGC TCGGGCCGCT CCCGCTGGCG AAGGCGCGCG AGGTCTCGAC GACGGTGCTC GACCGCAACG GTAAATTGCT CCGTGCTTTC GCCATGGCCG ACGGCAGGTG GCGATTGCCG GTCGATGCCA GGACCGATGT CGATCCGGGA TATCTCAACC TGCTGCTGGG CTATGAGGAC CAGCGTTTCT ATTCGCACAC GGGCGTCGAT CCGCTCGCGC TCGGCCGCGC CGCGTTGCAA CTCCTGACGC GCGGTCACAT CGTCTCGGGC GGATCGACCA TCACCATGCA GCTCGCCCGG CTGATCGAGC CGCGCCGCCG GCGCTCGATC TACGCCAAGC TGCATCAGGT GGTGCGCGCG TTCCAGCTCG AGCACGAACT CTCCAAGGAT GAAATCCTCA ACCTGTATCT GGCGCTTGCG CCGTTCGGCG GCAATCTCGA AGGCATTCGC GCGGCGTCCA TTGCCTATTT CGGCAAGGAG CCGAAGCGGC TGTCGCTGGC GGAGTCGGCG CTGCTCGTGG CCTTGCCGCA ATCGCCGGAA AGGCGCCGTC TCGACCGGCA CCCGACGGCT GCGCGCGCAG CCCGCGACCG CGTGCTCGAA CGCATGGTCG AGGAATCGCG TATCTCGGCG GAAGATGCCG CGCAGGCCAA GGCTGTGCCG GTCATGCGCA TGCGCAAACC ATTTCCGATG CTGGCGCCGC ATTCGGCGGA TAGGGCTCTG GCGACGGTCA GGGATTCGAG TGTCATTCGA CTCACGCTTG AGTCCGGATT GCAGCGAACG CTCGAAGCGC TGGCGCGCGA CCGTGCGGGG GCGCTCGGGC CGGACATTTC GATCGGCATC ATCGCGGTCG ACAACGCCAC CGGCGATGTG CTGGCCCATG TCGGGTCCGC AGATTATTTC AACGAGCGAC GCGCCGGGCA GGTGGACATG ACCCGGGCCG TGCGCTCGCC GGGATCGACG CTGAAGCCGT TTATCTACGG ACTGGCGTTC GAAGACGGCT TCGTTCACCC GGACAGCCTG ATCGACGATC GCCCGGTCCG GTTCGGCAGT TACGCGCCGG AAAACTTCGA CATGACGTTC CAGGGCACGG TGGCGGTGCG CCGCGCCCTG CAATTGTCGC TCAATGTTCC GGCGATCGAA CTGCTCGACC GCGTCGGCGC CAGTCGGTTG TCGTCGCGGC TGAAACAGGC GGGCGCCGAT CTCGTGCTTC CGAAGGACGA AGCCCCGGGT CTGGCGATGG GACTCGGCGG CGTCGGAGTG ACCCTGCATG ATCTGGTGCA GGCCTATTCC GGCATCCCCA GGCTGGGCAG CGTGATGCCC TTGCGTGAAA TCGAGCGCGG CGGCGGCAGC GTTCGGGAGC CTTTGCGACT GCTGGATCCG GTCGCGGCAT GGCAGGTCGG CAATGTTCTT TTGGGGACAC CACCGCCGGA AAACGCGGTC CGGAACCGGA TCGCTTTCAA GACCGGCACC AGCTACGGCT ATCGCGATGC GTGGTCCGTC GGCTTCGACG GCCGCGTGAC GATCGGCGTC TGGGTCGGGC GCCCGGACGG CGCGCCGGTG CCGGGTCTGG TCGGGCGTGT GGCAGCCGCG CCGGTTTTGT TCGATGCTTT CGCCCGTACC GGCAAGTTGC TGGCGCCGCT GCCAAAAGCT CCGCGTGGAA CCCTGATCGC CAGCAATGCA AAACTCCCGC TTCCCTTGCG GCGGTTTCGT CCCGCGGGCG AACTCATCCG GGTCGGCAAT AAGCACACGC TCCATATCCA GTTTCCACTG AACGGTTCGC GGATCGATGC CGGAGGAGGG GGCGGGATAA AGCTCTCCGC GCTACCGGTG AAAGTGGCGG GCGGCGTTTT GCCGATGACG ATGCTGGTCA ATGGGGTTGC GGTCGGGGAG ATCGACGGCC GCCGCCAGCG GATCATCGAT CCCCCCGGGC CGGGATTCGT TCGGCTGACC GTGATGGACG CGGCTGGCAG CGCGGACACA GTTACCGTCA GAATTCAATA G
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Protein sequence | MTASDTTAPT IQPRRWRRVK LAAAVVAVIT VVTAGAIASW IVSLGPLPLA KAREVSTTVL DRNGKLLRAF AMADGRWRLP VDARTDVDPG YLNLLLGYED QRFYSHTGVD PLALGRAALQ LLTRGHIVSG GSTITMQLAR LIEPRRRRSI YAKLHQVVRA FQLEHELSKD EILNLYLALA PFGGNLEGIR AASIAYFGKE PKRLSLAESA LLVALPQSPE RRRLDRHPTA ARAARDRVLE RMVEESRISA EDAAQAKAVP VMRMRKPFPM LAPHSADRAL ATVRDSSVIR LTLESGLQRT LEALARDRAG ALGPDISIGI IAVDNATGDV LAHVGSADYF NERRAGQVDM TRAVRSPGST LKPFIYGLAF EDGFVHPDSL IDDRPVRFGS YAPENFDMTF QGTVAVRRAL QLSLNVPAIE LLDRVGASRL SSRLKQAGAD LVLPKDEAPG LAMGLGGVGV TLHDLVQAYS GIPRLGSVMP LREIERGGGS VREPLRLLDP VAAWQVGNVL LGTPPPENAV RNRIAFKTGT SYGYRDAWSV GFDGRVTIGV WVGRPDGAPV PGLVGRVAAA PVLFDAFART GKLLAPLPKA PRGTLIASNA KLPLPLRRFR PAGELIRVGN KHTLHIQFPL NGSRIDAGGG GGIKLSALPV KVAGGVLPMT MLVNGVAVGE IDGRRQRIID PPGPGFVRLT VMDAAGSADT VTVRIQ
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