| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2072 |
|---|
| Symbol | |
|---|
| ID | 4031246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 2303646 |
|---|
| End bp | 2304842 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637970529 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | YP_577329 |
|---|
| Protein GI | 92117600 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.23598 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTCT CAAAGGACGG CGGACCGACG GATTCGCTTC GAGCGGAAAC CAGACTGGTC
GTTTCGGGTC GAGATACCGA GGCCCAAAAG GGGTTTGTCA ATCCGCCCGT CGTTCGCGGC
TCGACCGTGC TCTACCCGAC CGCGGGTGAC CTTCACGCCC ATCGCGGAGA ATTCCATTAC
GGACGGCACG GCACTCCCAC CACCCGCGCC TTGCAGGATG CGTTGACGGC GCTGGAAGGC
CCGCAGTGCG CGGGCGTCGG GCTCGTTCCA TCGGGGGTGT CTGCGATCTC CACCGCGCTG
CTGTCGGTGC TGAAGGCCGG CGATCACCTC CTTGTCTGCG ATAACGTCTA TCGCCCCACG
CGGAATTTCT GCGACGGGCT GCTGGCCCGC TACGGAGTCG AGACCACCTA TTTCGATCCG
CTGGTCGGTT CGGGTATCGC CGCGCTGTTT CGGCCCAACA CCCGCGCGGT CATGGCCGAG
GCTCCGGGTT CTCAGTCCCT GGAGATGCCC GACGTTCCGG CGATCGCCGC CGTCGCGCAC
GCGCGAGGCG CGCTCGTGGT CGACGACAAT ACGTGGGCCA CTCCCCTGTT CCGCCGCGCA
CTCGAACAGG GCGTGGACAT CAGCATTCAG GCGGCGACCA AATACATCGG CGGACATTCC
GACATCATGT TCGGAACCAT ATCCGCCAAC GCCAACGCGT GGCCGGCCGT CGCCGAGACC
ATCAGGCTGC TCGGCGTCTG CGCGGGACCT GACGATGTGT TTCTGGCATT GCGAGGACTG
CGGACACTCG CAGTCAGGCT CGCGCACCAC CAGCAAGCCG CGATCGACAT GGCGCAGTGG
CTCGCGAGAC GGCCGGAAGT CGCGAGGGTC TTGCATCCGG CGCTCCCGGA CGATCCCGGC
CACGCGATCT GGAAGCGCGA CTTCACCGGC GCGTCGGGGT TGTTCAGCAT CGTCCTCAAG
CCCGCGCCAC AACAGGCCGT CGATGCGCTG CTCGATACGG TGAAGCTATT CGGCATGGGT
TACTCGTGGG GCGGCTTTGA GAGTCTCGTC ATTCCCTTCG ATTGTGCGAC CTACCGGACT
GCCACAACCT GGGCGCCGGG CGGCCCGACG CTGCGGCTCC ACATCGGGCT GGAGAGCGTG
GATGATCTCA AGGCCGATCT CGACCGCGGG TTTGAAGCCG TCAACGCTCG GCGGTGA
|
|---|
| Protein sequence | MTLSKDGGPT DSLRAETRLV VSGRDTEAQK GFVNPPVVRG STVLYPTAGD LHAHRGEFHY
GRHGTPTTRA LQDALTALEG PQCAGVGLVP SGVSAISTAL LSVLKAGDHL LVCDNVYRPT
RNFCDGLLAR YGVETTYFDP LVGSGIAALF RPNTRAVMAE APGSQSLEMP DVPAIAAVAH
ARGALVVDDN TWATPLFRRA LEQGVDISIQ AATKYIGGHS DIMFGTISAN ANAWPAVAET
IRLLGVCAGP DDVFLALRGL RTLAVRLAHH QQAAIDMAQW LARRPEVARV LHPALPDDPG
HAIWKRDFTG ASGLFSIVLK PAPQQAVDAL LDTVKLFGMG YSWGGFESLV IPFDCATYRT
ATTWAPGGPT LRLHIGLESV DDLKADLDRG FEAVNARR
|
|---|
| |