| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2053 |
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| Symbol | |
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| ID | 4031473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 2276259 |
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| End bp | 2279780 |
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| Gene Length | 3522 bp |
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| Protein Length | 1173 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637970510 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_577311 |
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| Protein GI | 92117582 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0242332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCAG TTCGATCACC GGCGGAATCG CTGTCGCCCG GCCGTCCGCT GACGCTCGCG
AACGTCGCGG AAGGTGCCGA AGGGCTCGTC GTCTCGGACC TCGCGCGGGC TATCAAGGCC
AAAGCGGGAC GGCAGGCTTC GGCCGTCAGC CTCGCCGTGG TCTGCCGGGA TGGCCCACGC
ATGCAGCAAC TGGCGCGTGC GCTTGAGTTC TTCGCGCCTG ATATTTCGGT GATGCAGTTT
CCGGCGTGGG ACTGTCAGCC CTATGACCGG GTCTCGCCGC ACGGCGGCAT CCTTGCCCAG
CGGCTCACGA CACTGGCGCG CTTGTCTCGT CTGACCGGCA GCGAGGCGCC TTTGATCGTA
CTCACGACGG TCAACGCCAT CCTGCAACGG GTGCCCGCGC GCGCGATCGT CGCGTCTCAA
GCCCTGTCGG TCGCGCCCGG CCACGTGGTG CCGATGGACT CGATCGCCGC GTGGCTGGAG
CACAACGGCT ACAATCGCTC CTCGACGGTC CGCGAACCCG GCGAATACGC CGTGCGCGGC
GGCATCCTCG ATCTGTTTCC GTCCAGTCTC GACCAGCCTG TGCGGTTCGA TTTCTTCGGC
GACTCGCTGG AGTCGATCCG GTCGTTTGAC CCGGAAACCC AGCGCACACT GCTCGACGTG
CGTTCGCTCG ATCTTGTGCC GATCTCCGAA TTCCAGTTCG TCACCGAAAC CATCCGGCGT
TTCCGGATGG GATATGTCGC CGCTTTCGGT GCGCCCGGCC GCGATGACCT GTTGTACGAG
GCCGTCAGCG AGGGGCGGCG GCATCCGGGC ATGGAGCACT GGCTGCCGTT GTTTCACGAG
CGCATGGACA CGCTGTTCGA TTATCTCGAC GGCGCGCCCA TCGCCATTGA ACCGCAGGGG
GAAGACGCAG CGAACGAGCG TTTCAAGCAG ATCGTCGATT ACTACGAAGC GCGGCGCGAG
GCCCTTGAGC ACCCAGGCGG CGGTGCGGTC TACAAGCCGC TTCCGGTCGA CCGGCTTTAT
CTGACGCCGG ATGAATGGGC GAAGCGCGTC GATGAAGCCG CGCTGGTGCG ACTGACGCCT
TTCGCGGTGC CTGACGAGGC CGTCAATGTC ATCGACGCCG GCGCGCGGCA GGGGCGGAAT
TTTGCACCCG AACGGGCAGA TGCCGCCGTC AACGTTTTCG CGTCCGTCGT ATCCTATGTG
CAGGCCTTGC AGGCCGCGCG AAAGAAAGTC GTCGTCGCGT TGTGGAGCGA GGGTTCGCGC
GACCGCATGG CGAGCATGCT GAGGGATCAC AAGCTGCTCA ATCTGACCAG CGTCAATGCT
TGGCGCACGG TTCAGGCCAC GCCCCGCAAT GAAGTGATGC TGGCGGTCGT CGGCATGGAA
TCGGGATTCG AGACCGAGGC CGTCGCGGTC GTCAGCGAAC AGGATATTCT CGGTGATCGT
CTGGTGCGGC CGCGCAAGGC CAGCCGTAAA CTTGAAAATT TCATCTCGGA AGCGACCAGC
CTCGCGGCTG GCGATCTCGT CGTGCACGTG GAGCACGGCA TCGGACGGTT CACCGGTTTG
CAGACGCTCG AGGTGGGCGG TGCGCCGCAC GATTGTCTGG AACTGCGCTA TGCGAACGAA
ACAAAACTGT TTCTGCCGGT CGAGAATATT GAACTCCTAT CCCGCTACGG CTCCGATCAC
GCCAACGTCG AACTCGACCG CCTCGGCGGC AGTGGGTGGC AGGCCCGCAA GGCCAAACTG
AAGAACCGCA TTCGCGAGAT CGCAGGCGAA CTGATCAAGA TCGCCGCGGC GCGGCATTTG
CACGAAGCGC CGAAGATGCC GGTACAGTCC GGCCTCTATG ACGAATTCTG CGCGCGCTTT
CCCTACGAGG AAACCGAAGA TCAGCTCGGC GCGATCCATG CGTCGCTGAA AGACCTCGAG
AGCGGGCGGC CGATGGATCG GCTGATCTGC GGCGATGTCG GTTTCGGCAA GACCGAGGTG
GCGCTGCGGG CGGCGTTCGC CGTCGCGCTG GACGGGAAGC AGGTCGCTGT CGTGGTGCCG
ACGACATTGC TGGCGCGCCA ACATGCCAGG ACATTCACCG AACGGTTCCG CGGTTTTCCG
GTCAACGTCG CGCAGGCGTC GCGGCTGGTG TCGTCGAAGG AGTTGGCTCA GGTCAAGAAG
GGGATTGCCG ACGGCTCCGT CGATATCGTC GTCGGCACCC ATGCGCTGCT CGGAAAATCC
ATCAAGTTCA GGGATCTCGG ACTTCTCGTG GTGGACGAGG AGCAGCACTT TGGCGTCAGT
CACAAGGAGC GTCTCAAGCA GTTGCGAGCG CAGGTGCATG TCCTGACGCT GAGCGCGACT
CCAATTCCGC GCACGCTGCA ACTGGCGCTG ACGGGCGTAC GCGATCTTTC AATTATCGCT
TCGCCGCCGG TCGATCGCCT CGCCGTCCGC ACCTTCGTCG CGCCGCACGA TCCCTTGATG
ATCCGCGAGG CGCTGCTGCG CGAACGCTAT CGCGGCGGCC AGGCCTTCTA TGTGGTGCCG
CGCATCGACG ATCTCGCCGA GGTCAAGGAT TTTCTCGACA AGCATGTGCC GGAGATGAAG
GTCGCCGTTG CCCACGGTCA GATGGCGCCG ACGGTGATCG AGGACATCAT GTCGGCTTTC
TACGACGGAA AGTACGATGT CCTGCTCTCG ACCACCATCG TGGAGTCGGG TCTCGACATC
CCGTCCGCCA ACACCCTCAT CGTGCACCGC GCGGACATGT TCGGTCTGGC GCAGCTTTAT
CAGTTGCGCG GCCGGGTCGG CCGGTCGAAG CTGCGCGCCT ACGCGCTGTT CACACTGCCC
TCGACGCACA AGATCACGGC GCAGGCCGAG CGCCGGCTTA AGGTTCTGCA GTCGCTTGAA
ACGCTGGGGG CCGGCTTCCA GCTTGCGTCG CACGATCTCG ACATTCGCGG CGCCGGCAAT
CTGCTCGGCG AGGAACAGTC CGGCCACATC AGGGAAGTCG GATTCGAGCT CTATCAGTCG
ATGCTGGAGG AGGCGATCCT GAATCTGAAG GCTGGCGTTG CGGAGCCGGC CGCTGATCAG
TGGTCGCCGC AGATCACCAT TGGAATGCCG GTTTTGATTC CGGAAGATTT CGTCGCGGAT
CTCGCGGTGC GGCTGTCGCT GTATCGCCGG CTTGCCGACC TCGACACCGA TGACGAAATC
GAAGATTTCG GTGCGGAGTT GCGTGATCGC TTCGGTCCGC TGCCGGATGA AGTCCGGTAC
CTGTTCAAGG TCGCGGCCAT CAAGGCCTAT TGCCGCCGCG CCAATGTCGA GAAGGTGGAT
GCCGGGCCGA AGGGCGCTGT GATTTCCTTC CGTGACAACA AGTTCGCGCA ACCCGATCGG
CTGATCTATT TTATTCGTCA GCACGGACAG GCGGCAAAGG TCCGCCCAGA CATGAAGGTC
GTGTTCTTCC AAAATTGGGA AACGCCGGAG GAACGCCTGA CGGGAACCAC CGAAGTCATG
CGCCAGCTCG CCAATCTCGC GGAAGATCGC AAGGCGGCAT AA
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| Protein sequence | MAAVRSPAES LSPGRPLTLA NVAEGAEGLV VSDLARAIKA KAGRQASAVS LAVVCRDGPR
MQQLARALEF FAPDISVMQF PAWDCQPYDR VSPHGGILAQ RLTTLARLSR LTGSEAPLIV
LTTVNAILQR VPARAIVASQ ALSVAPGHVV PMDSIAAWLE HNGYNRSSTV REPGEYAVRG
GILDLFPSSL DQPVRFDFFG DSLESIRSFD PETQRTLLDV RSLDLVPISE FQFVTETIRR
FRMGYVAAFG APGRDDLLYE AVSEGRRHPG MEHWLPLFHE RMDTLFDYLD GAPIAIEPQG
EDAANERFKQ IVDYYEARRE ALEHPGGGAV YKPLPVDRLY LTPDEWAKRV DEAALVRLTP
FAVPDEAVNV IDAGARQGRN FAPERADAAV NVFASVVSYV QALQAARKKV VVALWSEGSR
DRMASMLRDH KLLNLTSVNA WRTVQATPRN EVMLAVVGME SGFETEAVAV VSEQDILGDR
LVRPRKASRK LENFISEATS LAAGDLVVHV EHGIGRFTGL QTLEVGGAPH DCLELRYANE
TKLFLPVENI ELLSRYGSDH ANVELDRLGG SGWQARKAKL KNRIREIAGE LIKIAAARHL
HEAPKMPVQS GLYDEFCARF PYEETEDQLG AIHASLKDLE SGRPMDRLIC GDVGFGKTEV
ALRAAFAVAL DGKQVAVVVP TTLLARQHAR TFTERFRGFP VNVAQASRLV SSKELAQVKK
GIADGSVDIV VGTHALLGKS IKFRDLGLLV VDEEQHFGVS HKERLKQLRA QVHVLTLSAT
PIPRTLQLAL TGVRDLSIIA SPPVDRLAVR TFVAPHDPLM IREALLRERY RGGQAFYVVP
RIDDLAEVKD FLDKHVPEMK VAVAHGQMAP TVIEDIMSAF YDGKYDVLLS TTIVESGLDI
PSANTLIVHR ADMFGLAQLY QLRGRVGRSK LRAYALFTLP STHKITAQAE RRLKVLQSLE
TLGAGFQLAS HDLDIRGAGN LLGEEQSGHI REVGFELYQS MLEEAILNLK AGVAEPAADQ
WSPQITIGMP VLIPEDFVAD LAVRLSLYRR LADLDTDDEI EDFGAELRDR FGPLPDEVRY
LFKVAAIKAY CRRANVEKVD AGPKGAVISF RDNKFAQPDR LIYFIRQHGQ AAKVRPDMKV
VFFQNWETPE ERLTGTTEVM RQLANLAEDR KAA
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