Gene Nham_2050 details

Gene Information

• Locus tag: Nham_2050
• ID: 4031470
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 2271562
• End bp: 2273424
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637970507
• Product: extracellular solute-binding protein
• Protein accession: YP_577308
• Protein GI: 92117579
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4166] ABC-type oligopeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCCAAGG GCGAATCAAA ACGGACCCCG AGTTTGCGAT CGATACCGCG CAACCGCAGC 
CGGATAGGAG CGTGTCTGGG CCTCGCGGTC GGGCTGCTCG CTGCGGGGTC CGAAGGGATT 
TCGGCGAGTC CTGACTATGC TATCGCGATG CACGGCACAC CAGCCTTGCC GGCCGGTTTC 
AGCCAGATGC CCTATGTCAA TCCGGACGCG CCCAAGGGTG GCCGGCTGGT TCAGAGCGTT 
CCGGGCAGCT TCGATAGCCT CAATCCCTTC ATCGTCAAAG GCGTTGCCCT CCAGCAAATA 
CGGGGGTTCG TGGTCGAGAG CCTGATGGCC CGAGGCAACG ACGAACCCTT CACGCTCTAT 
GGCCTCCTGG CGAACAGCGT TGAGACCGAC GACGCCCGAA CCCATGCCAC CTTCCACCTC 
AACCCGCTGG CGCGTTTTTC CGACGGGCAG CCCGTCCGTG CCGAAGACGT GCTGTTCTCC 
TGGCAACTCC TGCGAGACAA GGGCCGCCCC AACCATCGCC TGTATTATTC GAAGGTCGCA 
ACGGCAAAGG CGATCGATGA ACGCACAGTG CGTTTCGATT TCGGCGGAAC CAGAGATCGC 
GAACTGCCGC TGATCCTCGG GCTGATGCCG ATTTTGCCGA AACATGCGAT CGACGTCGCG 
ACTTTCGAGC AGACCTCGAT GACGGCGCCG TTGGGTTCCG GGCCGTATCG CGTCACTGCG 
GTAAAGCCCG GAGCCAGCGT CACGCTGACG CGCAATGCGG ACTATTGGGG GCGTGACCTG 
CCGGTCAATC GTGGCCTGTG GAATTTCGAC GAGATCAGGT TCGACTTCTA TCGCGAAGCC 
AACAGTCAGT TCGAAGCCTT CAAGCGCGGG CTGTACGATT TTCGCGTCGA GACCGAACCG 
CTGCGCTGGC ACGATGGGTA CAATTTTCCG GCCGCCCGCA ACGGTCAGCT CGTTCGCGAA 
ACCATCAAGA CGGGCCTGCC AGCGCCGTCG GAATTTCTGG TGTTCAATAC CCGACGTCAG 
ATGTTCTCCG ACGTCCGCGT CCGCGAAGCG CTGACGCTGT TGTTCGATTT CGAGTGGATC 
AACCGGAACT ATTTTTTCGG GCTCTACAGC CGCGCCGGGG GCTTCTTCGC GGGATCGGAA 
CTGTCTGCCT ACGCACGCCC CGCCGACGAA CGGGAACGGT CGTTGTTGAA GCCGTTTGCG 
TCGGCCGTGC GGCCCGATGT TCTCGACGGC AACTACCGTC TGCCGGTGAC AGACGGCTCA 
GGCCGCGACC GCAAGGCCTT GCGCGCCGCC CTCGCCCTGC TGTCGCAAGC CGGTTACGAG 
CTTGACGGGA CGGTCTTGCG TCACCGCTCA ACCAGGGCGC CCCTCGCCTT CGAAATCCTG 
GTGACGACGC GCGATCAGGA ACGAATCGCG CTCACCTATG CGCGCGATCT CAAGCGGGCC 
GGCATTGAGG TGTCCGTGCG CTCGGTCGAT GCCGTGCAGT TCGACCAGCG GCGGCTGAGC 
TTCGATTTCG ACATGATCCA GAACCGCTGG GATCAATCGC TGTCGCCGGG CAACGAGCAG 
TCATTTTACT GGGGCAGCGA GGCCGCCGAC ACCACCGGGA CTCGAAATTA CATGGGCGCG 
AAGAATCCGG CGATCGATGC CATGATCGCC GCCCTGCTCG AGGCCCGGGA GCGTCCGGCT 
TTCGTGGATG CGGTTCGCGC GCTCGACCGG GTCCTGATGT CCGGCTTCTA CGCAATTCCG 
GTCTACAACG TTCGAGAGCA ATGGATTGCT CGCTGGAATC GGATAGAACG ACCGGCAGCG 
ACCGCGTTGA CCGGATACCT CCCCGAAACA TGGTGGCAAA GGCCGCCGAA GTCGAGCCAG 
TGA 

 

Protein sequence

MSKGESKRTP SLRSIPRNRS RIGACLGLAV GLLAAGSEGI SASPDYAIAM HGTPALPAGF 
SQMPYVNPDA PKGGRLVQSV PGSFDSLNPF IVKGVALQQI RGFVVESLMA RGNDEPFTLY 
GLLANSVETD DARTHATFHL NPLARFSDGQ PVRAEDVLFS WQLLRDKGRP NHRLYYSKVA 
TAKAIDERTV RFDFGGTRDR ELPLILGLMP ILPKHAIDVA TFEQTSMTAP LGSGPYRVTA 
VKPGASVTLT RNADYWGRDL PVNRGLWNFD EIRFDFYREA NSQFEAFKRG LYDFRVETEP 
LRWHDGYNFP AARNGQLVRE TIKTGLPAPS EFLVFNTRRQ MFSDVRVREA LTLLFDFEWI 
NRNYFFGLYS RAGGFFAGSE LSAYARPADE RERSLLKPFA SAVRPDVLDG NYRLPVTDGS 
GRDRKALRAA LALLSQAGYE LDGTVLRHRS TRAPLAFEIL VTTRDQERIA LTYARDLKRA 
GIEVSVRSVD AVQFDQRRLS FDFDMIQNRW DQSLSPGNEQ SFYWGSEAAD TTGTRNYMGA 
KNPAIDAMIA ALLEARERPA FVDAVRALDR VLMSGFYAIP VYNVREQWIA RWNRIERPAA 
TALTGYLPET WWQRPPKSSQ