| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1954 |
|---|
| Symbol | |
|---|
| ID | 4033090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 2170384 |
|---|
| End bp | 2171541 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637970414 |
|---|
| Product | transposase IS116/IS110/IS902 |
|---|
| Protein accession | YP_577216 |
|---|
| Protein GI | 92117487 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3547] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAG TCGATGATTT GAGTCGTTCC CTCACCGCGT TGGCTCAAGA TAGCACATTG
ATGACGGTTA TCGAACTGAG CAAGTCGAGT TGGCTCGTCG CCGGGATGGT GCCAGGCATT
GAGCGTCATC CGGTAAAGAA GCTCGATCCC GATCCGGTGG CTTTGCTCAA CCTGGTCAGT
CGCTGGCGCT GCGAAGCGGA GAGGAAGGAG CGGCGGATCG AGCGGGTCGT GCTCGCCTTC
GAGGCGGGCC GCGACGGATT CTGGCTGGCG CGATGGCTGC GAGAGCGTGG CATCGAGGCG
TATGTGATCC ATTCGACGAG CGTCGCGGTC ACGCGCGAGC ACCGACGGGC GAAGACCGAC
CGGCTGGATA CGGCGATGCT GATGCGCGTT TTTCTCGGTT GGTTACGTGG CGAACGCGGT
CATTGCCGAA TGGTCGCGAT TCCGACCTAC GAGGAGGAAG ACGCCAAGCG GCCGAGCAGA
GAGCGAGAAA GTCTGGTTGG CGAACGGACG CGGATCATCA ATCGAATGAA GGGCGCCCTG
GCACGGTTGG GGATTCGCGG ATTCAAGCCG GAACTGCGGC GAGCTCCGGA AAAACTGAGC
GCGTTGCTTA CACCGGAAGG GGAGCTGCTT CCCTCGAATC TGCTGGAAGA GATGAGGCGC
GAGATGACGC GGCTCTCCTT GATCCGCGAG CAGATCGCGG CCATCGAACA AGCGCGACTT
GTACGATTGC AGCAGGCACC CACGTCGCGA CCGAACGCGA TGACAACGCT CCTGGCCAGG
GTTATCGGAG TCGGATTGGA AACGGCCGAT ATGTTGGTTC AGGAGGTGTT GAACCGCAAC
CTGCGCGATC GTCGGGCGGT GGCCCGCTAT GCCGGCTTGA CGGGCTCTCC TGACGAGAGT
GGCTCGAGGC GACGGGAAAA GGGGCTTGCC AAGGCGGGCA ATGCCCGAGT GCGCCGTGGG
TTAATCCAGC TCGCTTGGCG ATTCTTGATG TTCCAAAAGG ATAGCGGGCT GGCGCAATGG
TACCGGGCTC GAACTGGTCA GGGTGCGCGC AAGACGACGG TGATCGTGGC GCTCGCCAGA
AAGCTGCTGA TCGCGCTCTG GCGCATGGTG ACAGTCGGCG AAGTCCCGAC CGGTGTCGTG
CTGCGACCGG GAATGTGA
|
|---|
| Protein sequence | MPAVDDLSRS LTALAQDSTL MTVIELSKSS WLVAGMVPGI ERHPVKKLDP DPVALLNLVS
RWRCEAERKE RRIERVVLAF EAGRDGFWLA RWLRERGIEA YVIHSTSVAV TREHRRAKTD
RLDTAMLMRV FLGWLRGERG HCRMVAIPTY EEEDAKRPSR ERESLVGERT RIINRMKGAL
ARLGIRGFKP ELRRAPEKLS ALLTPEGELL PSNLLEEMRR EMTRLSLIRE QIAAIEQARL
VRLQQAPTSR PNAMTTLLAR VIGVGLETAD MLVQEVLNRN LRDRRAVARY AGLTGSPDES
GSRRREKGLA KAGNARVRRG LIQLAWRFLM FQKDSGLAQW YRARTGQGAR KTTVIVALAR
KLLIALWRMV TVGEVPTGVV LRPGM
|
|---|
| |