| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1853 |
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| Symbol | |
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| ID | 4033030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2064089 |
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| End bp | 2065504 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637970325 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_577127 |
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| Protein GI | 92117398 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGGG CCGTCCTGAC GGGCGTTGTC GCCGCCGCGC TTATAGCGGC GGTTGGCGGC
GCATTCATTG CCGACCATGT GCGTTGGGTT AGCTCGATTC GCTTGGCGAC GCCGGCTGCG
GCAGAGTCCG CCGCCGCACC GATCTATTAT CAGGATCCGG ACGGCAAGTC ATTGTACTCG
CTCAATCCGA AGAAGACGGA GGATGGACGC GCCTACCGTC CGGTGCCGCC CAGTGCCGAC
GTGAGTTTCG ACGATCCCGC GAGCGAGGCG GCGGGCGCCG AGGCTGCCGA TGCAGAGGGC
GACGACCGCA AGATCAAATA TTACCGCAAT CCGATGGGCC TGCCGGATAC GTCGCCGACA
CCGAAGAGGG ACTCGATGGG GATGGATTAT ATCCCCGTGT ACGAAGACGA GGACACCGAC
GACGGCTCGA TCAAGTTAAC TCCGGGCAAA ATCCAACGCA CGAGCGTGCA ATCCGAGCGC
GCCATACCCC GCGTAATCCG GACGATGGTG CGGGTACCCG GCACGATCCA ACTCGATGAG
CGACGGGTGT CGGTGATCTC GATGCGCGCG GAAAGCTGGG TGCAGAAGGT CGCGAACGTC
ACCATCGGGT CCGCCGTCAA GAAAGGGCAA CCGTTGATGG AGATATACAG CGCGGCGATT
TCGTCGGCCG CGGCGGAGTA CATCTCCACG ATCAACTCGC CTGTCACGGC TTCCCCGGAG
CGCTACGGCC GCGGATCGCG GCAACGCTTG ATGAACCTCG ATGTTCCGGA TAGCGCGATC
GTCGCCATGG AAAGGACCCG GGTGGTTCCG ATTGCGATCG AATGGACCGC GCCGCGCGAT
GGCATCGTGC TGGAACGCAA TGCCATCGAG GGCATGCGGG CACAGCCCGG CGAGGTCCTG
TTCCGCGTCG CCGATACCTC GGTGGTGTGG GCCGTGGTCG ATGTCGCCGA GCGAGACCTT
GGTGCGGTGC GGGCAGGGCA ACCGGTCACC GTGAGGGCAC GCAGTTTTCC GGGACGCACG
TTCTCCGGAA AGATCAGCGT GATCTATCCG CAAGTGAACC GCGAAACGCG CACGGCACGG
GCCAGGATCG AACTGGCCAA TCCCGATCTC GCCTTGCTCC CCGACATGTA CGTCGACGCG
GAAATCGACA CCGGCAATCC GGCACCGGTC TTGGCGATTC CGGAAAGCGC GGTGCTCGAT
ACCGGGGCGC GACAGTCCGT GCTGGTGGAC AAGGGGGAAG GGCGCTTCGA ACCACGCGAG
GTGAAGCTTG GCCGGCGTGG CAATGGTTAC GTCGAGGTAC GAGAAGGTGT GCACGACGGC
GAGGCTGTCG TGGTGTCGGC GAACTTCCTG ATCGATGCCG AAAGCAATCT GAAGGCTGCG
CTGAAGAGCT TTTCGGACGC GGGGGGCCAA CCATGA
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| Protein sequence | MKRAVLTGVV AAALIAAVGG AFIADHVRWV SSIRLATPAA AESAAAPIYY QDPDGKSLYS
LNPKKTEDGR AYRPVPPSAD VSFDDPASEA AGAEAADAEG DDRKIKYYRN PMGLPDTSPT
PKRDSMGMDY IPVYEDEDTD DGSIKLTPGK IQRTSVQSER AIPRVIRTMV RVPGTIQLDE
RRVSVISMRA ESWVQKVANV TIGSAVKKGQ PLMEIYSAAI SSAAAEYIST INSPVTASPE
RYGRGSRQRL MNLDVPDSAI VAMERTRVVP IAIEWTAPRD GIVLERNAIE GMRAQPGEVL
FRVADTSVVW AVVDVAERDL GAVRAGQPVT VRARSFPGRT FSGKISVIYP QVNRETRTAR
ARIELANPDL ALLPDMYVDA EIDTGNPAPV LAIPESAVLD TGARQSVLVD KGEGRFEPRE
VKLGRRGNGY VEVREGVHDG EAVVVSANFL IDAESNLKAA LKSFSDAGGQ P
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