| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1834 |
|---|
| Symbol | |
|---|
| ID | 4033011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 2041956 |
|---|
| End bp | 2043215 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637970306 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_577108 |
|---|
| Protein GI | 92117379 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.669413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAGGG CAGCGGAGTT TCCTCCTCCA GCGACACCAT TGATTCCAAT GCCGACCTCA
AAACGAACTG CCGCCATCAT TGTTGCCGCA GGCCGCGGGC TCCGCGCCGG TACCGGCGGT
CCCAAGCAAT ACCGGACCAT CGCCGGGCGG ACCGTGATTG CGCGGGCCAT GGAGGCGTTT
TGCGATCACC CCGACGTTTT CGCGGTCCAA CCGGTGCTCA ATCCGGATGA CCTTGCGATG
TTCAATCAGG CCGTCGCCGG GTTTCGCTAT CGGCCACCGG CGAATGGCGG CGCCACCCGT
CAGGCCTCCG TTCACGCCGG CCTCGAAGCC CTCGCCGCTG ATGCGCCGGA CATCGTGCTG
ATTCACGATG CCGCCCGGCC ATTCGCGACG CCGGCGCTGA TCCGGCGCGC GATCGAGGCC
ACCGATATAA CCGGCGCGGC GGTGCCCGTC ATTCCCGTCA CCGACACCAT CAAACAGGTC
GATGCGTCCG GCGCTGTCAA TGCGACCCCC GATCGTGCAA AACTGCGGAT CGCGCAGACG
CCGCAGGCGT TCCGTTTCGA TGTGATCCTC GACGCGCATC GCCGCGCGGC ACGCGACGGC
CGCGACGATT TCACCGACGA CGCCGCGCTC GCCGAGTGGG TGGGATTGAC GGTTGCGACA
TTCGAAGGCG ATGCTGCCAA CATGAAACTC ACAACTCCGG AAGATTTCGT GCGCGAGGAA
GCGCGCCTCG CAGCAATGCT CGGCGACATC AGGACCGGCA CCGGCTACGA TGTCCACGCC
TTCGGCGACG GCGACCACGT CATGCTGTGC GGGGTGAAGG TCCCGCACAA TCGCGGCTTC
CTGGCGCACT CCGACGGCGA CGTCGGCCTG CACGCGCTGG TCGATGCCAT CCTAGGCGCG
CTGGCGGACG GCGACATCGG TTCGCATTTT CCGCCGAGCG ATCCGCAGTG GAAGGGCGCG
GCCTCCGACA AATTCCTGAA ATACGCCGTC GACCGCGTCG CCGCGCGCGG CGGCCGCATC
GCCAATCTCG AAGTCACCAT GATCTGCGAG CGGCCCAAAA TCGGACCCTT GCGCGATACG
ATGCGGGCGC GCATCGCCGA AATCACGGGC GTCGCGATTT CACGCATCGC CGTAAAGGCG
ACTACCAGCG AGCGGCTCGG ATTCACCGGG CGCGAGGAAG GAATCGCGAC GACAGCCAGC
GCCACTGTCC GCCTGCCCTG GAACGATAGC GACCAGGAAG ACAAGGGCTG GAGCACCTGA
|
|---|
| Protein sequence | MVRAAEFPPP ATPLIPMPTS KRTAAIIVAA GRGLRAGTGG PKQYRTIAGR TVIARAMEAF
CDHPDVFAVQ PVLNPDDLAM FNQAVAGFRY RPPANGGATR QASVHAGLEA LAADAPDIVL
IHDAARPFAT PALIRRAIEA TDITGAAVPV IPVTDTIKQV DASGAVNATP DRAKLRIAQT
PQAFRFDVIL DAHRRAARDG RDDFTDDAAL AEWVGLTVAT FEGDAANMKL TTPEDFVREE
ARLAAMLGDI RTGTGYDVHA FGDGDHVMLC GVKVPHNRGF LAHSDGDVGL HALVDAILGA
LADGDIGSHF PPSDPQWKGA ASDKFLKYAV DRVAARGGRI ANLEVTMICE RPKIGPLRDT
MRARIAEITG VAISRIAVKA TTSERLGFTG REEGIATTAS ATVRLPWNDS DQEDKGWST
|
|---|
| |