| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1824 |
|---|
| Symbol | |
|---|
| ID | 4033001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 2028255 |
|---|
| End bp | 2030786 |
|---|
| Gene Length | 2532 bp |
|---|
| Protein Length | 843 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637970296 |
|---|
| Product | penicillin-binding protein 1A |
|---|
| Protein accession | YP_577098 |
|---|
| Protein GI | 92117369 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0792156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCCAG GCCGCCGGCA ACGAAACGGA CATTCGATAA TGCGCTTGCT GCTGCGATTC
ATGGGTTTCC TGTTTGCAGC GGGAACCATC CTGTTTCTGG TCGGCGTCGC GGCGGCTGCG
GCATTGATCT GGCATTTTTC CAAGGACCTG CCGGACTACT CCCAGCTTCA GAATTATGAA
CCGCCGGTGA TGACCCGTGT CCATGCGTCC GATGGTTCGC TGCTTGGCGA GTATGCGAAG
GAGCGCCGAC TCTACCTGCC GATACAGGCG GTGCCGAAGC TGGTCATCAA CGCGTTCCTG
GCTGCGGAGG ACAAGAATTT CTACGAGCAT GGCGGCATCG ATTATCCCGG CATGCTGCGC
GCGGCGCTGC TTTATGCCCA GAACTTCGGA TCGAACAAAC GGCCGCAGGG GGCCTCCACG
ATCACCCAGC AGGTTGCCAA GAACTTCCTG CTGACCAATG AAGTTTCCTT TACCCGCAAG
ATCAAGGAAG CGTTGCTGGC GATGCGCATC GAGCGGGCCT ATTCGAAGGA CAAGATCCTC
GAACTGTACT TGAACGAGAT CTACCTCGGC CTCGGAGCCT ACGGCATCGC TGCCGCATCG
CTCGTGTATT TCGACAAATC GGTCAACGAG TTGACGGTCG CCGAGGCCGC CTATCTGGCG
GCTTTGCCCA AGGCGCCCTC GACCCTGCAT CCGGTCAAGA ACCACGACCG CGCGGTCGAA
CGGCGCGATT ATGTCATCGA CCGGCTGCTG GAGAACGGCT GGATCAAGCA GGCCGACGCC
GACAAGGCCC GCAAGGCTCC GCTGATCGTC ACCAGCCGGG CCAACGGGGC GCATACCTTT
GCCGGCGAGT ATTTCGCCGA GGAAGTTCGG CGCGACCTGT TCGAACGCTA CGGCGAAAAG
AAGCTCTACG AGGGAGGTCT GTCGGTCCGG ACGACGCTCG ACCCGAAGCT GCAGGCGATA
GCGCGCAAGA CCATGGCCAA TGGCCTCGTC ACCTATGACG AGGCCCAGGG CTGGCGCGGC
GCAATAAGCA AGCTCGATAT TTCCGGCGAC TGGGGCGTGA AGCTCGCCGA CGTCAAATCG
CTGTCCGACA TCGCGCCGTG GCGGATGGCG GTCGTGCTCG AATCCGACGA CAAGTCCGCA
CGGATCGGCC TTCAGCCCGG CCGCGAACTT GGCGGCGCCG TGAGCAAGGA GCGGCAAACG
GGATTGATCA CGCTCGACGG GGTGAAGTGG GCCAAAGTCG CGTCCGGATC GACGCGAGGC
CGTTCGCCGA CGAAGGTGTC GCAGGTGCTT TCGCCCGGCG ACGTTATCTA TGCCGATCCT
CTGATTGCAA AGAACGGCAA GGTGGTCGAC GGCGAATACC GGTTGCGGCA ACTACCCGAA
GTGTCCGGCG CGATGGTGAC GATGGATCCG TGGACCGGCC GTGTGCTGGC AATGGTCGGT
GGCTTCTCGT TCGATCAAAG CCAGTTCAAT CGCGCAACAC AGGCCTATCG GCAGCCGGGC
TCCTCGTTCA AGCCGATCGT CTATTCCACG GCGCTCGACA ACGGCTATAC GCCATCGACC
GTGATCGTCG ATGCGCCGAT CGAGATCGAC CAGGGGCAGG GCTCCGGCGT GTGGCGTCCG
GAAAACTACT CGAAGGAAAA ATACTACGGG CCGCAAACGC TCCGGAATGC GCTGCGGCTC
TCGCTCAACA CCGTAACGGT CCGGCTGGCG CAAGACATCG GCATGCCCTT GATCGGCGAA
TATGCCAAGC GCTTCGGGAT CTACGACGAA CTGCCGAACT ATCTCTCATA CGCGCTGGGA
GCCGGCGAGA CCACGGTGTT GCGCATGGTG ACCGCGTATT CGATGTTCGA CAATGGCGGC
AGACGCGTGA AGCCGACCCT GATCGATCGC ATTCAGGATC GCTATGGCCA CACCATCTAC
AAGCACGACA CGCGCGAGTG CCGCGGGTGC GATGCGCCGG AAGGCTGGAA GAACCAGCCC
GAACCCCAGT TGATCGACCA TCGCGAGCAG GTGCTGGATT CGATGACGGC CTATCAGATC
ACCTCGATGA TGGAGGGCGT GGTGCAGGCC GGCACCGCCA CGGTCATGCG CGATGTCGGC
AAGCCGATTG CCGGCAAGAC CGGCACCACT AACGACCAGA AGGACGCCTG GTTCATCGGA
TTCTCGCCCG ACCTCGTCGT CGGCGTCTAC ATCGGCTACG ACAAGCCGCG CAATCTCGGC
CGTACCGCGA CCGGTGGACA CCTGGCGGCG CCGATCGCGC GCGATTTCAT GAAGGTCGCG
CTTGCCGACA AGCCGGCCAC TCCGTTCCGT ATCCCCGCCG GCATCAAGCT GGTTCGCGTC
GATGCCAAGA CCGGTATGCG CGCCGGTCCT GGCGATACCG GCAAGACCAT CCTCGAAGCC
TTCAAGCCCG GCACCGCGCC GCCCGACAAT TATTCCGTGA TCGGCGTGGC GGATGCCGAC
GGACGCCAGC CGCAACCGCT GCCCGACGCC GACCGCAGCC TATTCCGGCC CGGGACCGGC
GGGCTTTACT AG
|
|---|
| Protein sequence | MSPGRRQRNG HSIMRLLLRF MGFLFAAGTI LFLVGVAAAA ALIWHFSKDL PDYSQLQNYE
PPVMTRVHAS DGSLLGEYAK ERRLYLPIQA VPKLVINAFL AAEDKNFYEH GGIDYPGMLR
AALLYAQNFG SNKRPQGAST ITQQVAKNFL LTNEVSFTRK IKEALLAMRI ERAYSKDKIL
ELYLNEIYLG LGAYGIAAAS LVYFDKSVNE LTVAEAAYLA ALPKAPSTLH PVKNHDRAVE
RRDYVIDRLL ENGWIKQADA DKARKAPLIV TSRANGAHTF AGEYFAEEVR RDLFERYGEK
KLYEGGLSVR TTLDPKLQAI ARKTMANGLV TYDEAQGWRG AISKLDISGD WGVKLADVKS
LSDIAPWRMA VVLESDDKSA RIGLQPGREL GGAVSKERQT GLITLDGVKW AKVASGSTRG
RSPTKVSQVL SPGDVIYADP LIAKNGKVVD GEYRLRQLPE VSGAMVTMDP WTGRVLAMVG
GFSFDQSQFN RATQAYRQPG SSFKPIVYST ALDNGYTPST VIVDAPIEID QGQGSGVWRP
ENYSKEKYYG PQTLRNALRL SLNTVTVRLA QDIGMPLIGE YAKRFGIYDE LPNYLSYALG
AGETTVLRMV TAYSMFDNGG RRVKPTLIDR IQDRYGHTIY KHDTRECRGC DAPEGWKNQP
EPQLIDHREQ VLDSMTAYQI TSMMEGVVQA GTATVMRDVG KPIAGKTGTT NDQKDAWFIG
FSPDLVVGVY IGYDKPRNLG RTATGGHLAA PIARDFMKVA LADKPATPFR IPAGIKLVRV
DAKTGMRAGP GDTGKTILEA FKPGTAPPDN YSVIGVADAD GRQPQPLPDA DRSLFRPGTG
GLY
|
|---|
| |