| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1816 |
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| Symbol | |
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| ID | 4032993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2017557 |
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| End bp | 2018708 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637970288 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_577090 |
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| Protein GI | 92117361 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.162198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCTTCC GCATTCTGGA AGAGCAGTAC GGCGAAAAAC TCCGGAAGGC CAAGGCCGTT
GACTTGCGTT TCATGCAACT AGCGCTGGCG CTGGGTCGCC GCAGCCTGGG CGCGAGCGCG
CCCAATCCGG CCGTCGGCGC CGTCATCGTG AAAGACGATG TGATCGTCGG CCGCGGCTGG
ACCCAGCCGG GAGGGCGCCC GCACGCCGAG GCCGAGGCGC TGCGGCGCGC GGGCGAGGCG
GCGCGCGGCG CGACGCTGTA TGTCACGCTG GAGCCGTGTT CGCATGTCGG AAAAACGCCG
CCATGCGCCG ATGCCGTGAT CGCGGCCGGC ATCACGCGTG TCGTGTCCGC AATCGAGGAT
CCCACTCCGG AAGTCGCGGG GCAGGGCCAT GCGCGGCTGC GGGCCGCCGG AATATCGGTC
GATGTCGGAC TTTGCGCAGC CGAGGCGGCA CACCATCATG CCGGGCATTT CCGGCGGATC
CGGGACAAGC GCCCGCACGT CATCCTCAAG CTCGCGGTGT CCAGCGACGG AAGGATCGCT
GCGGCCGGAG GCGTACCGGT CGCTATTACG GGCGAGGCGG CCAAGGCGCG GGTGCATCTG
CTGCGCGCGC AATGCAACGC CATTCTGGTC GGCATCGGCA CCGTGCTGGC CGACAATCCT
CTCCTGACCT GCCGCCTTCC CGGCATGGAA GCGCGCTCGC CGCTGCGTGT GGTGCTGGAT
CACGCGCTGC GTATTCCGCA CGACAGCCGG CTGGTCCGGT CCGCGCGCGA GACCCCGCTT
TGGGTGATGG CATCGGATCT TGCCCAGGCA CCCGTAGCCA TGAAGCTCGG CGCCGCGGGC
GTGCAGGTAC TGCGCGTTCC GGTCGCGGCT GGAGCGCCCG GGCTTGACCT GGCGGCAATT
CTCCGCGCCC TGTCCGAAAG AGGCGTCACC CGTCTGGTGG TCGAAGGCGG TGCGCGTGTT
GCATCGTCAT TCGTCGCGGC CGGTCTGGTC GACGAAGCCT GGCTGCTGCG TGGTCCCGAT
CCGATCGGCG ACGACGGCGT GGCGGCGCTT GGCGCCTTGC CGCTGACCGC CATCACCGGG
TCGCCGCAGT TCAGGGCGTG TGCAAGCAAG ACGCTGGATC AGGACACTCT CGCGATTTAC
GAGCGTGTCT AG
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| Protein sequence | MIFRILEEQY GEKLRKAKAV DLRFMQLALA LGRRSLGASA PNPAVGAVIV KDDVIVGRGW
TQPGGRPHAE AEALRRAGEA ARGATLYVTL EPCSHVGKTP PCADAVIAAG ITRVVSAIED
PTPEVAGQGH ARLRAAGISV DVGLCAAEAA HHHAGHFRRI RDKRPHVILK LAVSSDGRIA
AAGGVPVAIT GEAAKARVHL LRAQCNAILV GIGTVLADNP LLTCRLPGME ARSPLRVVLD
HALRIPHDSR LVRSARETPL WVMASDLAQA PVAMKLGAAG VQVLRVPVAA GAPGLDLAAI
LRALSERGVT RLVVEGGARV ASSFVAAGLV DEAWLLRGPD PIGDDGVAAL GALPLTAITG
SPQFRACASK TLDQDTLAIY ERV
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