| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1799 |
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| Symbol | secD |
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| ID | 4032976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2000175 |
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| End bp | 2001776 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637970271 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_577073 |
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| Protein GI | 92117344 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.127943 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGTATT TTACGCGGTG GAAGGCACTG GCGATCATCG TGACCGCCCT CGCGATCTGC
CTGTGCGCGG TGCCGAACTT CTTCCCCGAA GCACAGGTCA AGACCTGGCC GAAATGGGCG
CAGCGCCACC TCGTTCTGGG GCTCGATCTC CAGGGTGGCT CGTATCTGCT GCTTGAGGTC
GATTCCAACT ACGTCAAAAA AGAGAAACTC GACCAGGTCC GCGACGACGC ACGCAAGGCG
CTGCGCGACG CGCGGATCGC CTATACCGGC CTTGCCGCCA AGAACGGCGT GGTCGAGGTG
CGCATTAGCA AGGAGGAGGA ATTCCAGACG GCGCTCGGCA AGTTGCGCGA GTTGTCGCAG
CCACTCGGCG GTCTGCTCGG CTCCACTGGC CAGCGCAGCC TCGAAGTCAG CAGTGCTGAC
GGCGGGCTGA TCCGCATGAC GGTTCCGCAG GCCGCGGTCA CCGACCGCAT CCGCCAGTCG
GTCGAGCAGT CGATCCAGAT TATCGAGAAG CGCGTCAACG AACTCGGCAC CGTCGAGCCG
CTGATCCAGC GTCAGGGCAC CGATCGTATT CTGGTGCAGG TGCCGGGATT GCAGGACCCG
ACGCGGCTGA AGGAAATTCT CGGCAAGACC GCCAAGATGG ACTTCCGCAT GGTCGATTCG
AGCGTGTCGC CCGAGCAGGC CCTTCAGGGC CGGGTTCCTG CCGATTCCGA AGTGCTGATG
AGTTCGCAGG CGCCCAAGAC GCCTTACGTC GTCAAGAAGC AGGTGCTGGT TTCCGGCGGC
GACCTGACCG ACGCCCAGCC CGGATTCGAT TCGCGCACCA GCGAGCCGAT CGTGACCTTC
CGCTTCAACA GCAACGGCGC GCGCAAGTTC GCACAGGCGA CGTCGGAAAA CGTCGGGCAG
CCATTTGCCA TCATACTCGA CAACGAGGTG ATCTCGGCGC CGGTCATCCG CGAACCGATC
ACCGGCGGCT CCGGGCAGAT TTCCGGGAAT TTCACGGTGC AGGAGGCCAA CGACCTCGCG
ATCCTGCTGC GCGCCGGCGC GCTGCCGGCG CCGCTGACAA TCATCGAGGA GCGCACCGTC
GGTCCCGGCC TTGGACAGGA TTCGATCGAA AAAGGCGAAC TCGCGGCCTA TGTCGGTTCG
ATCATGGTGA TCGTGTTCAT GCTGCTGACC TACCGGCTGT TCGGTGTGTT TGCTAATATC
GCGGTCGCCA TCAACGTCGC CATGATTTTC GGCGTGCTGT CGTTGCTGAA CGCGACGCTG
ACGCTGCCCG GCATCGCCGG GATCGTGCTG ACCGTGGGCA TCGCCGTCGA TTCCAACGTG
CTGATCTATG AGCGTATCCG CGAGGAAGTC CGCGGCGGCC GCACCGCGAT TTCGGCGATC
GATGCCGGCT TCAAGCGGGC GCTGGCGACG ATCCTGGATT CCAACATCAC GACCTTCATC
GCTGCCGCGG TGCTGTTCTA TATCGGCACC GGCCCGGTGC GCGGCTTCGC CGTGACGCTC
GGCATCGGCA TCATCACCAC GGTGTTCACC GCGTTCGAGG TGACCAGGCT GATCGTGGCG
ACATGGGTGC GCTGGAAGCG GCCGCAAAAC GTACCGATCT GA
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| Protein sequence | MLYFTRWKAL AIIVTALAIC LCAVPNFFPE AQVKTWPKWA QRHLVLGLDL QGGSYLLLEV
DSNYVKKEKL DQVRDDARKA LRDARIAYTG LAAKNGVVEV RISKEEEFQT ALGKLRELSQ
PLGGLLGSTG QRSLEVSSAD GGLIRMTVPQ AAVTDRIRQS VEQSIQIIEK RVNELGTVEP
LIQRQGTDRI LVQVPGLQDP TRLKEILGKT AKMDFRMVDS SVSPEQALQG RVPADSEVLM
SSQAPKTPYV VKKQVLVSGG DLTDAQPGFD SRTSEPIVTF RFNSNGARKF AQATSENVGQ
PFAIILDNEV ISAPVIREPI TGGSGQISGN FTVQEANDLA ILLRAGALPA PLTIIEERTV
GPGLGQDSIE KGELAAYVGS IMVIVFMLLT YRLFGVFANI AVAINVAMIF GVLSLLNATL
TLPGIAGIVL TVGIAVDSNV LIYERIREEV RGGRTAISAI DAGFKRALAT ILDSNITTFI
AAAVLFYIGT GPVRGFAVTL GIGIITTVFT AFEVTRLIVA TWVRWKRPQN VPI
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