| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1719 |
|---|
| Symbol | |
|---|
| ID | 4030319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1921475 |
|---|
| End bp | 1922629 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637970191 |
|---|
| Product | phage major capsid protein, HK97 |
|---|
| Protein accession | YP_576995 |
|---|
| Protein GI | 92117266 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
|---|
| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTCC ACACTGCTAC TGCTCTTGAG ACCAAGAACG CAGCCGAACT TCCTGCGGAA
GACGGCGCGG CCGAAATCAA GTCGGCGCTT GAAGCGCTGA CCGCTGACGT CAACACGAAG
ACGGCACCGG TCGCCGATCT TGAAAAGCGA CTTGCCGCGG CCGAAGTCAA ACTCGCCCGC
CCTGCCATTC ATACTGAGAA GAAGGACGAG ATCAGCGCTG AACGCAAAGC ATTCACCGGC
TACCTGCGCA ACGGCAAAGA GACGTTGACC GCGGATGAGG TGAAGTCGCT CACGATCGCC
CCAGATAGCT CTGGAGGTTA CCTCGCTCCG ATTGAGTTCA GCGCGGAAGT CGTGAAGGGT
ATTGTCGAGC AATCGCCCGT TCGCCAGGCT GCTCGCGTGG GCAACACTTC GAGCGGCGAA
GTTCTAATTC CTAAGCGCAC GGGTCGCCCG ACTGGCAAGT GGGTCGGTGA AACCGAGACC
CGCACCGGAA CGGAGTCCAG TTACGGTCAG GTTGAGATCC CGATCCATGA AATGGCGTGC
TATGTGGATG TTTCGCAGCG CCTCTTGGAA GACGCCGCGG TCAACGTTGA AGCCGAAGTT
GCCTTCGACC TCGCCGAGGA ATTCGGACGT CTGGAGGCTC TTGGTTTCCA GCGTGGTGAT
GGCGTGAAGA AACCGCTCGG CGTCATGGCG TCTGCGGGTA TCGCCTACAC GCCAACGGGC
AACGCTTCGA CGCTCGGCAC GAATCCTGCC GACACTATCA TCGATGCGTT CTACGCCTTG
CCGGCGTTCT ATCGTGGCCG GTCGGTTTGG ATGATGAACT CCAAAACCAT AGCCACCGTT
CGCAAGCTGA AGGATGGCAC CACGGGCAGT TACCTGTGGC AGCCCGGTTT GGCCGCGTCT
GATCCTTCGA CCATCCTCGG GCGTCCGGTT ATCGAAGATA ATACGCTCGA CGATGTTGGC
AGCGCAGCAG AGCCGATCGT GTTCGGCGAC TTCGCCTCTG CGTACCGCAT TTATGATCGC
GTCGCATTGA GCCTGCTTCG TGACCAGTAC AGCCAAGCTG CAAATGGTCT GGTGCGTTTC
CACGCGCGTC GTCGTGTTGG TGGTGCGTTG GTTCTCGCCG ATGCGCTGCG CAAGATCAAG
TGCGCGACCA GCTAA
|
|---|
| Protein sequence | MTFHTATALE TKNAAELPAE DGAAEIKSAL EALTADVNTK TAPVADLEKR LAAAEVKLAR
PAIHTEKKDE ISAERKAFTG YLRNGKETLT ADEVKSLTIA PDSSGGYLAP IEFSAEVVKG
IVEQSPVRQA ARVGNTSSGE VLIPKRTGRP TGKWVGETET RTGTESSYGQ VEIPIHEMAC
YVDVSQRLLE DAAVNVEAEV AFDLAEEFGR LEALGFQRGD GVKKPLGVMA SAGIAYTPTG
NASTLGTNPA DTIIDAFYAL PAFYRGRSVW MMNSKTIATV RKLKDGTTGS YLWQPGLAAS
DPSTILGRPV IEDNTLDDVG SAAEPIVFGD FASAYRIYDR VALSLLRDQY SQAANGLVRF
HARRRVGGAL VLADALRKIK CATS
|
|---|
| |