| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1644 |
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| Symbol | rpsD |
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| ID | 4032897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 1845709 |
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| End bp | 1846326 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637970118 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_576922 |
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| Protein GI | 92117193 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTAAGC GCAATGAGGC GAAGTACAAG ATCGATCGCC GTATGGGCCA GAACATCTGG
GGCCGCCCGA AGAGCCCCGT CAACAAGCGC GAATACGGCC CCGGCCAGCA TGGCCAGCGC
CGCAAGGGCA AGCTCTCCGA CTTCGGCACC CAGCTCCGCG CCAAGCAGAA GCTAAAAGGC
TACTACGCCA ACATTTCCGA ACGCCAGTTC TACGCGATCT ACGTCGAGGC GACCCGCTTG
AAGGGCGATT CCGGCGAGAA CCTGATCGGC CTGCTCGAGC GCCGCCTCGA CACCGTGGTC
TATCGCGCGA AGTTCGTGCC GACCATGTTC GCCGCGCGCC AGTTCATCAA CCACGGCCAC
GTCAAGGTGA ACGGTCGCCG CGTCAACATT CCGAGCTACA AGCTCAAGGT CGGCGACGCC
ATCGAGGTCA AGGACGCATC GAAGCAGCTC GCGCTGGTGC TGGAAGCCAA CCAGCTCGCC
GAACGCGACG TGCCTGATTT CATCGATGCC GACCACAACA AGCAGACCGC GAAATTCGTC
CGCATCCCGC ACCTTGCGGA TGTGCCGTTC GCGGTGCAGA TGGAACCGCA TCTGATCGTC
GAATTCTATT CGCGCTGA
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| Protein sequence | MTKRNEAKYK IDRRMGQNIW GRPKSPVNKR EYGPGQHGQR RKGKLSDFGT QLRAKQKLKG
YYANISERQF YAIYVEATRL KGDSGENLIG LLERRLDTVV YRAKFVPTMF AARQFINHGH
VKVNGRRVNI PSYKLKVGDA IEVKDASKQL ALVLEANQLA ERDVPDFIDA DHNKQTAKFV
RIPHLADVPF AVQMEPHLIV EFYSR
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