Gene Nham_1624 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_1624 
Symbol 
ID4033318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp1825902 
End bp1827134 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content69% 
IMG OID637970099 
ProductRNA methyltransferase TrmH, group 1 
Protein accessionYP_576903 
Protein GI92117174 
COG category[J] Translation, ribosomal structure and biogenesis
[S] Function unknown 
COG ID[COG0565] rRNA methylase
[COG2852] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00050] RNA methyltransferase, TrmH family, group 1 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGGCA CCGACAGGAC AAAAACCGGC ATCGACGCGG TCGGCCCCAC CGTGATTCTG 
GTCGAGCCGC AGCTCGGCGA GAACATCGGC ATGGCGGCGC GCGCCATGGG CAATTTCGCC
CTGACGCGGC TGCGCATCGT CAACCCGCGC GACGGCTGGC CCAATGTCGC GGCCCAGCGC
GCGGCGGCGG GCGCCGACCA TATCCTCAAG CACGTCGAGC TGTTCGACAC CGTGGAGGCC
GCGGTCGCCG ACTGCACGCT GCTGTTAGCG ACCACCGCGC GCGCCCACGA TCAGGCCAAG
CCGGTGGTGG CGCCGGAAGC GGCGGCCGCT GAGGCGACCG TGCAGATCGC GGCCGGCGGC
CATGTCGGCA TCCTGTTCGG CCGCGAGCGC GCCGGCCTGC TGAATGAAGA GGTGGCGATG
GCCGACCGCA TCATCACCTA TCCCGTCAAT CCGGGCTTTG CCTCGCTCAA CCTGGCGCAG
GCGGTGCTGC TGATGGGTTA CGAATGGTTC AAACTGGTGA CGCGGGCCGC GCTGCCGTTC
GCCATGCCGG AACGCTCGGA GCGGGCCTCC CAGCACCAGA TGCAGGCGTT CTTCGACAAT
CTCGTCAGCG AACTCGACAA GGTCGAATTC CTCCGCCCGG CCGAGAAGCG CGACACCATG
CTGGTCAACC TGCGCAACAT CTTCACCCGC ATGGAGCCGA CCAAGCAGGA CATGCACACG
CTGCACGGCG TGGTCATGGC CATCGCTGAG GGGCGCAAGG GACCGGCCAA GGGCGGGGTG
CTCGACGGCG CGCAAGCGAC GCGGCTGCGG GCATTGCTGG CCGAGCAGGG GCCGGGAGGG
GCTTCCGCAG ACAGCAGCAG CACGGTGCGC GGGCTGGCGC GGCTGCTCAG ACGAAATCCG
ACCGACGCCG AGCGCATCCT GTGGCAATCG CTAACCCGCG ACCGCCGCTT CGCCGGCCAG
TTCAAGCGGC AGACACCGGT CGGCCGGCAC ATTCCGGATT TCGTGTCGTT CGTGCAACGC
ATCGCGATCG AACTGGTGAA TCCGAACGAG AGCGACACCA TCGCGCGCGA CCGCGCAGGC
CGTGGTGCCT GGCTGGCCGA GCGCGGCTAT CGCGTCGTCG AGATCGAGGC GGCGGCGGTG
GAGGCGGATT TGGCGCGCGT GCTGGACGGG TTGGCGGTGA GGATGGCGGC GGGGGAGGGC
GAGGGGGCCG TAGGGCACGA TGGGCAGCGA TGA
 
Protein sequence
MSGTDRTKTG IDAVGPTVIL VEPQLGENIG MAARAMGNFA LTRLRIVNPR DGWPNVAAQR 
AAAGADHILK HVELFDTVEA AVADCTLLLA TTARAHDQAK PVVAPEAAAA EATVQIAAGG
HVGILFGRER AGLLNEEVAM ADRIITYPVN PGFASLNLAQ AVLLMGYEWF KLVTRAALPF
AMPERSERAS QHQMQAFFDN LVSELDKVEF LRPAEKRDTM LVNLRNIFTR MEPTKQDMHT
LHGVVMAIAE GRKGPAKGGV LDGAQATRLR ALLAEQGPGG ASADSSSTVR GLARLLRRNP
TDAERILWQS LTRDRRFAGQ FKRQTPVGRH IPDFVSFVQR IAIELVNPNE SDTIARDRAG
RGAWLAERGY RVVEIEAAAV EADLARVLDG LAVRMAAGEG EGAVGHDGQR