| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1621 |
|---|
| Symbol | alaS |
|---|
| ID | 4033315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1821179 |
|---|
| End bp | 1823872 |
|---|
| Gene Length | 2694 bp |
|---|
| Protein Length | 897 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637970096 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_576900 |
|---|
| Protein GI | 92117171 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACGCGAT GGAACACAAT GAGCGGCGTT AACGACATCA GGTCGGCGTT TCTGAACTAC
TTCGCGGCCA ACGGCCACGA GATCGTGCCC TCATCGCCGC TGGTTCCGCG CAACGATCCG
ACGCTGATGT TCACCAACGC GGGCATGGTG CAGTTCAAGA ACGTCTTTAC GGGCGTCGAG
AAGCGGCCCT ATCAGCGCGC CACCACCTCG CAGAAATGCG TGCGCGCCGG CGGCAAGCAC
AACGACCTCG ACAATGTCGG CTATACCGCG CGGCACCACA CCTTCTTCGA GATGCTCGGC
AACTTCTCGT TCGGCGACTA CTTCAAGGAC CGCGCCATCG AACTGGCGTG GAAACTGGTG
ACTGAGGAAT TCGGCCTGCC GAAGGACAAG CTCATCGCCA CCGTCTACAT CGACGACGAT
GAGGCGTTCG GACTCTGGAA GAAGATCGCA GGCCTGCCGG ACTCGCGCAT CATCCGCATC
GCCGGCGCCG ACAATTTCTG GCAGATGGGA GACACCGGCC CGTGCGGTCC GTGCTCGGAG
ATCTTCTACG ATCACGGCGA CAAAATTCCC GGCGGGCCTC CGGGATCGCC GGACGAGGAT
GGCGACCGTT TCGTCGAGAT ATGGAATCTC GTATTCATGC AATACGAGAA GCTGCCGGAC
GGCAGCCGCC TCAACCTGCC GAAGCCGTCG ATCGACACCG GCGCCGGTCT TGAGCGCGTG
GCCGCCGTGC TTCAGGGCAA GCACGACAAC TACGACATCG ACCTGTTCGT CGCGCTGATC
CGCGCCGCGG CCGATCTGAC CGGCGCGGAC CCGCATGGCC CGATGAAGGC GTCGCTGCGC
GTGATCGCAG ATCACTTGCG CGCAACCTCG TTCCTGATCG CCGACGGCGT GCTGCCGTCG
AACGAAGGCC GCGGCTACGT GCTGCGCCGG ATCATGCGGC GCGCGATGCG TCACGCCCAA
TTGCTCGGCG CGAAGGAGCC GCTGATGTGG CGGCTGGTCG GTGTGCTGGT GCGCGAGATG
GGGGAGGCCT TTCCCGAGTT GCAGCGCGCG CGGCCATTGA TCGAGGAAAC GCTGCGGCTC
GAGGAGACGC GCTTCCGCAA GACGCTGGAG CGCGGGCTCT CTATTCTCGA CGAGAAGAGC
GCGTCGCTGA AGAAAGGCGA CATGTTCGAC GGCGAGACCG CGTTCACGCT GTACGACACC
TACGGCTTCC CGCTCGATCT GACGCAGGAC GCGTTGCGTG CGCGCGGCAT CGGCGTGGAT
ATCGCATCGT TCACCGATGC GATGGAACAG CAGAAGGCCA AGGCGAGGGC GTCGTGGTCG
GGCTCGGGCG AGGCCGCCAC TGAGACGATC TGGTTTCCTT TGCGCGAAAA ACTCGGGGCC
ACGGAATTTC TCGGCTACGA GACCGAGATC GCGGAGGGCG CCGTCGCTGC GCTCGTGAAG
GACGGCAAGG AAGCCGACAG CCTCAAGGCC GGCGAGAGCG GGGCCATCGT TTTGAACCAG
ACGCCGTTCT ATGGCGAATC CGGCGGTCAG GTCGGCGACA CCGGCATTCT GACCGGCGAT
GGCGTGCGCG TCCGCGTCAC CGATACGCAG AAGAAGGCAG GCGATCTGTT CGTGCATCTC
GGCACCGTCG AGCAGGGCAC ACTCACGCCC GGCATGGCGC TGGCGCTGGA GGTTGACCGC
GCCCGGCGCG GCGCGATCCG CGCCAACCAT TCCGCGACCC ATTTGCTGCA CGAGGCGCTG
CGGCAGGTAC TCGGCGATCA CATCGCGCAG CGCGGCTCGC TGGTCGCGCC GGAGCGGCTG
AGGTTCGATT TCGTCCACAA CAAACCGATC AGCGCGGACG AGCTGCGCCG CATCGAGGAC
ATCGCCAACG ACGTCGTGTT GGAGAACGGC GAGGTGACGA CCCGCCTGAT GGCGGTGGAC
GATGCGCGCG AGGCCGGGGC ACGGGCGCTG TTCGGCGAAA AGTACGGCGA CGAGGTGCGC
GTGGTGTCCA TGGGCAGCAC GGGGCGGCAG GGCGCGGCGA GCAACGCGCT TGGCTGGTCG
GTCGAGCTCT GCGGCGGCAC CCATGTGAAA CGCACCGGCG ATATCGGGCT GATCTCGGTG
ACCGGCGAAA GCGCGGTCGC CTCGGGCGTG CGCCGGATCG AGGCGCTGAC CGGGCATCAT
GCGCGCCATC ACGCCAACGA CGCCATCCAG CTTGCGAAAA CCGCCGCCGG CGAGTTGCGC
ACCACGCTCG ACGATATGCC GCCGCGGATC ACCTCGCTGA TGGAGGAACG CAAGAAACTC
GAGCGCGAAC TGTCCGAAGC GCGCAAGAAA CTCGCCATGG GCGGCGGGGC CGCGAGCGCA
TCGTCCGGCG CGGCGGGCGT GCGCGATGTC GGCGGCATCA AGCTGATGGC GCGTTCGGTC
GAGGGCATCG AGATCAAGGA TCTCAAGAAC CTCGCCGATC AGGGCAAGAA GCAACTGGGT
TCGGGCGTGG TTGCGCTGGT CGCGACCAGC GGCGACGGCA AGGCGAGCAT CGTGGTCGGC
GTGACGCCCG ATCTCGTGAC GCGCTTCTCG GCGGTCGATC TTGTGCGCAA GGCGTCGGAA
GTGCTCGGCG GCAAGGGCGG CGGTGGCAAA CCGGACATGG CGCAGGCCGG CGGTCCGGAT
GGCGCCAAAG CGGGCGCCGC GCTCGACGCC ATCGCCGCGG CAATGGGCGG CTAA
|
|---|
| Protein sequence | MTRWNTMSGV NDIRSAFLNY FAANGHEIVP SSPLVPRNDP TLMFTNAGMV QFKNVFTGVE
KRPYQRATTS QKCVRAGGKH NDLDNVGYTA RHHTFFEMLG NFSFGDYFKD RAIELAWKLV
TEEFGLPKDK LIATVYIDDD EAFGLWKKIA GLPDSRIIRI AGADNFWQMG DTGPCGPCSE
IFYDHGDKIP GGPPGSPDED GDRFVEIWNL VFMQYEKLPD GSRLNLPKPS IDTGAGLERV
AAVLQGKHDN YDIDLFVALI RAAADLTGAD PHGPMKASLR VIADHLRATS FLIADGVLPS
NEGRGYVLRR IMRRAMRHAQ LLGAKEPLMW RLVGVLVREM GEAFPELQRA RPLIEETLRL
EETRFRKTLE RGLSILDEKS ASLKKGDMFD GETAFTLYDT YGFPLDLTQD ALRARGIGVD
IASFTDAMEQ QKAKARASWS GSGEAATETI WFPLREKLGA TEFLGYETEI AEGAVAALVK
DGKEADSLKA GESGAIVLNQ TPFYGESGGQ VGDTGILTGD GVRVRVTDTQ KKAGDLFVHL
GTVEQGTLTP GMALALEVDR ARRGAIRANH SATHLLHEAL RQVLGDHIAQ RGSLVAPERL
RFDFVHNKPI SADELRRIED IANDVVLENG EVTTRLMAVD DAREAGARAL FGEKYGDEVR
VVSMGSTGRQ GAASNALGWS VELCGGTHVK RTGDIGLISV TGESAVASGV RRIEALTGHH
ARHHANDAIQ LAKTAAGELR TTLDDMPPRI TSLMEERKKL ERELSEARKK LAMGGGAASA
SSGAAGVRDV GGIKLMARSV EGIEIKDLKN LADQGKKQLG SGVVALVATS GDGKASIVVG
VTPDLVTRFS AVDLVRKASE VLGGKGGGGK PDMAQAGGPD GAKAGAALDA IAAAMGG
|
|---|
| |