| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1575 |
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| Symbol | |
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| ID | 4033052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1778752 |
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| End bp | 1779987 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637970050 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_576856 |
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| Protein GI | 92117127 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.286446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCC GCGTCAAAAG ACCTCTCGCG AAATCCCGCG GCCCGGGCAG CGCGCGCCCC
AAGGGTGCGA GGGCCAAAGC TGCCCGGCCC AAAGGGACGC GGTCGGCTGG GCGTGGCGTG
GCTGAGCGTT TTCAGGGCGA GCGGTGGCAG GGGGGGCGGC CTGACAAGCC GCCACGCGTA
GCGGCGCCTC GCGATTCCGT GCCCGTCATC GAACCGCCGG CCAAACCCGA GCCGGCGCCG
CTACCGACGA AAGTGCAGAC CGTCGCCGTG ACCGCCGACG AAGCCAACAT GCGCGTCGAT
CGCTTTCTTG AAGCGCGCTT TCCCGGCCTG TCGTTTTCCC ATATTCAGCG CGTCGTCCGC
AAAGGCGAGT TGCGCGTGAA CGGCAAGCGC GCCGACAGCA AGGATCGCCT GGGCGAAGGC
GATAAGGTCC GCATCCCGCC GCTCAAGCTC GACACGCCGA AGGTCGCGGC GGGCCTGTCC
GAGGCCGAGA CAAAGATACG CGACGAACTG CAGAAGATGG TGCTGTTCGA GGATGCCGAC
GTCATGGTGC TGAACAAACC GGCCGGTCTT GCGGTGCAGG GCGGCTCCGG CCTGTCGCGG
CACATAGACG GCATGCTTGA AGTGATGTGC GACGCGAAAG GTCAGCGCCC GCGCCTCGTG
CATCGGCTGG ATCGCGAGAC GGCCGGCTGC CTGCTGGTGG CCAAGACGCG GTTTGCGGCG
ACCGCCCTGA CAGGGTCGTT CCGCCATCGC TCGGCGCGCA AGATTTATTG GGCGCTGGTC
GCGGGCGTGC CGAAGCCGAA GCAGGGTCGC ATCTCGACCT ATCTCGCCAA GGAAGAGAGC
GAGGAGGATT CAATCATGCG GATCGCCGCG CATGGCGACG AAGGCGCGAG CCACGCGGTG
ACCTACTACG CGGTGGTGGA AACCTCGGCG CAGAAGCTCG CCTGGGTTTC GCTGAAGCCC
GTCACGGGCC GGACCCATCA ACTCCGCGCG CATATGGCGC ATATCGATCA CGCCATCGTC
GGCGATCCAA AATACTTCAA TAAGGAAAAC TGGCAATTGC CGGGCGGTCT TCAGAAGCGG
CTGCATCTCC TGGCGCGCCG CATCGTGATC CCGCATCCGC GCGGCGGCGT CATCGATGTC
ACCGCGCCGC TGCCGCCGCA CATGCTGCAA TCCTGGAATC TGCTCGGCCT CGAAGCGGAC
CGGTTTGACC CGATCGAGAA CGCGCCGGAG GAGTAA
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| Protein sequence | MSRRVKRPLA KSRGPGSARP KGARAKAARP KGTRSAGRGV AERFQGERWQ GGRPDKPPRV
AAPRDSVPVI EPPAKPEPAP LPTKVQTVAV TADEANMRVD RFLEARFPGL SFSHIQRVVR
KGELRVNGKR ADSKDRLGEG DKVRIPPLKL DTPKVAAGLS EAETKIRDEL QKMVLFEDAD
VMVLNKPAGL AVQGGSGLSR HIDGMLEVMC DAKGQRPRLV HRLDRETAGC LLVAKTRFAA
TALTGSFRHR SARKIYWALV AGVPKPKQGR ISTYLAKEES EEDSIMRIAA HGDEGASHAV
TYYAVVETSA QKLAWVSLKP VTGRTHQLRA HMAHIDHAIV GDPKYFNKEN WQLPGGLQKR
LHLLARRIVI PHPRGGVIDV TAPLPPHMLQ SWNLLGLEAD RFDPIENAPE E
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