Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_1551 |
Symbol | rpsC |
ID | 4030705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | + |
Start bp | 1762317 |
End bp | 1763012 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637970027 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_576833 |
Protein GI | 92117104 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTCAAA AGATCAATCC AATCGGGCTG CGTCTGGGCA TTAACCGGAC CTGGGACTCC CGTTGGTATG CCGGCAAGAA CGAGTACGGC AGGCTGCTGC ACGAGGACGT CAGGATCCGC GAGCTCCTGC ACAAGGAGCT CAAGCAGGCG GCCGTCGCGC GCATCGTGAT CGAGCGCCCG CATAAGAAGT GCCGCGTCAC GATTCATTCG GCGCGTCCCG GCGTCGTCAT CGGCAAGAAG GGCGCCGATA TCGACAAGCT TCGCAAGAGG GTTGCCGACA TCACTTCGTC CGACGTCGTC ATCAACATCG TCGAGATTCG CAAGCCGGAG CTTGATGCCA CGTTGGTCGC CGAATCGATC GCGCAGCAGC TTGAGCGCCG CGTCGCGTTC CGCCGCGCGA TGAAACGCGC CGTACAGTCG GCGATGCGTC TCGGCGCCGA GGGCATTCGT ATCAACTGCT CGGGCCGTCT CGGCGGTGCC GAAATCGCTC GCATGGAGTG GTATCGCGAA GGCCGCGTAC CGCTGCACAC GCTGCGCGCC GACGTTGATT ACGGCGTCGC CACCGCGTTC ACGACGTTCG GCACCTGCGG CGTCAAGGTC TGGATCTTCA AGGGCGAAAT CCTCGAGCAC GATCCGATGG CCCAGGACAA GCGCCTGGCT GGTGACGACA ACCGTCCGCG CCGCGACGCG GCTTGA
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Protein sequence | MGQKINPIGL RLGINRTWDS RWYAGKNEYG RLLHEDVRIR ELLHKELKQA AVARIVIERP HKKCRVTIHS ARPGVVIGKK GADIDKLRKR VADITSSDVV INIVEIRKPE LDATLVAESI AQQLERRVAF RRAMKRAVQS AMRLGAEGIR INCSGRLGGA EIARMEWYRE GRVPLHTLRA DVDYGVATAF TTFGTCGVKV WIFKGEILEH DPMAQDKRLA GDDNRPRRDA A
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