Gene Nham_1534 details

Gene Information

• Locus tag: Nham_1534
• ID: 4032627
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 1747112
• End bp: 1749118
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637970010
• Product: ABC transporter related
• Protein accession: YP_576816
• Protein GI: 92117087
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.948204
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTCAAGG TGCCGCCGCT CGACCATTCA CTCGTTCCCG ATGATGCGGT AACGATTCCG 
CCGGAGAACC CGCCTGCCGA GACCGGGCCG ACGTCCGCGT CGCCAGCGCC GCGCAGACCT 
GATGCAGAGC CCCGTGCGCC GGTCGGCCAT GAGGAGGACG ACGATGGGGA CGAGGGCGAG 
GACGGCGAAC CCGTCCTCGA CGATGACGAC GAGGAACTCG TCGTCTATAC GGCGCGCGAG 
GCCGCCGGAG CGGCCGCGAC GGTCTATGCG TTCATCCGGC CCTTGCTTCG AAATCACCGC 
AAGGCGCTGA CCTTCGTCGG CTTCGGCCTG CTGGTCGAGA CGCTGTTCAA CGTCGTCATG 
CCGCTTAGCC TCAAGTTCCT GATCGACGAT GCGCTTGGCG AGGAGGATTT CGGCGTTCTG 
GTTCGAATCC TGTCGGTGCT TGCGGTCGCC GGCATTGTCA CCTCGCTGAT CTCGATCTGG 
TACGAACGCT GGGACGCCTG GCTGTCGTCA TCGATCGTCT CGGAGGTGCG GCAGCGGCTG 
TTCAATCACG TGCAGGATCT GCCGTCGGCA TTTTTTGCGC GCACCAGGCG GGGGGAAATC 
CTGTCGCGCT TCTCCGTCGA TCTCTCGGCG TTCGAAGGCG CGATGAAGGC GCTCGTAAGT 
ACGGCGCTGC TTCCGGCGAT GGAGCTGGTC GCAGGCATCG TTCTGATGCT GTTTTTAAGC 
TGGCCGTTGG CGGTGGTCGC GTTGCTGATC TTTCCGATCA CCTTGATCGG GCCGCGTATC 
CTGACCCCGA AGGCGGTGCA GGCAAACTAC GAGCAGAAGG TCAACGAGTC GGCGATCCTC 
GGCGTGGTCC AGGAAAACAT CGCCGCGCAA GCTCTGGTCA AGGCCTTCAG CCTGCAGCGT 
CGCGCCCGCG GCTGGTTCAC CGTCCGCAAT GAAGAGACCA GAAAGAAGAT CGCATCCTCC 
ACGTTTCTGT CGAGCATGGT CGAGCGCTCG GTCACGGTGG CCGTGCTGCT GCTGCACCTC 
GTCGTTCTCG GCATCGGTGC CTATCTCGCG ACCAGCGGGC AGATCACAAT CGGAACGTTC 
GTGACGTTTG AAAGCGCGTT CTGGGAAATC TCATACAATA TCGCGCATCT GATGTCTTAT 
GTGCCGGTCT CGATTCAGGC CGCGGCCGCC GTGCGCCACA TGGAGGAACT GATCGACGAG 
CCGACGCGCG GCGCCGACCG CCGCGGCGCG CCGGACCTGC CGCGCATCAG CCGCGACATC 
ACCTTCGATC GTGTGACGTT TCGATATGAG GACGCCGAGA CACCCGTCCT CAACAATCTC 
AGTCTGAAGC TCGATGCCGG AAAGCGTATC GCGATTGTCG GGCCGAGCGG CTCCGGCAAG 
AGCACGCTGC TCAATCTGAT TCTGCGCCTC TATGTTCCGA ACCACGGGCG CGTCACCATC 
GACGGCGTCG ATACCCGCAA GGTGACGCGC GAGTCGCTTC GATCCGGCAT GGCCGTGGTG 
TTCCAGGAGA ACATGCTTTT CAACATGTCG ATCCGGGAAA ACATCCGTCT CGGCAAGGAA 
GACGCCAGCG ACGAGGAGGT CGAGGCCGCG GCGAAAAAGG CCGAGATCCA TCGCTTTATC 
ATGAGCCTGC CGCGGCGCTA CGACACCGTC GTCGGTGAGC GCGGAGATAC GCTGTCCGGC 
GGCCAGCGCC AGCGCGTGGC GATTGCGCGC GCGATCGTTC GCGACCCGTC GATTCTGCTG 
CTCGACGAGG CGACGTCCGC GCTCGACCAG ACCACCGAAG CCGCGATCAA TCGCACGCTA 
CTGAAGGTAG CCAGGGGCCG GACCATGATA TTTTCGACCC ATCGCCTGAC CTCGGTGGTC 
GACATGGACG AGATCATCGT CATCAGCGGT GGTCGGGCGG TCGAACGGGG CTCCCACGCA 
GTACTGATGA AGGCCAACGG CGTCTACCGC AAGCTCTGGG ACGACCAGAG TCACGGGCAT 
CACGATAGCG ATGGTGAAGG CGAGTAG 

 

Protein sequence

MLKVPPLDHS LVPDDAVTIP PENPPAETGP TSASPAPRRP DAEPRAPVGH EEDDDGDEGE 
DGEPVLDDDD EELVVYTARE AAGAAATVYA FIRPLLRNHR KALTFVGFGL LVETLFNVVM 
PLSLKFLIDD ALGEEDFGVL VRILSVLAVA GIVTSLISIW YERWDAWLSS SIVSEVRQRL 
FNHVQDLPSA FFARTRRGEI LSRFSVDLSA FEGAMKALVS TALLPAMELV AGIVLMLFLS 
WPLAVVALLI FPITLIGPRI LTPKAVQANY EQKVNESAIL GVVQENIAAQ ALVKAFSLQR 
RARGWFTVRN EETRKKIASS TFLSSMVERS VTVAVLLLHL VVLGIGAYLA TSGQITIGTF 
VTFESAFWEI SYNIAHLMSY VPVSIQAAAA VRHMEELIDE PTRGADRRGA PDLPRISRDI 
TFDRVTFRYE DAETPVLNNL SLKLDAGKRI AIVGPSGSGK STLLNLILRL YVPNHGRVTI 
DGVDTRKVTR ESLRSGMAVV FQENMLFNMS IRENIRLGKE DASDEEVEAA AKKAEIHRFI 
MSLPRRYDTV VGERGDTLSG GQRQRVAIAR AIVRDPSILL LDEATSALDQ TTEAAINRTL 
LKVARGRTMI FSTHRLTSVV DMDEIIVISG GRAVERGSHA VLMKANGVYR KLWDDQSHGH 
HDSDGEGE