| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1532 |
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| Symbol | |
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| ID | 4032625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1740427 |
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| End bp | 1744626 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637970008 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_576814 |
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| Protein GI | 92117085 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCAAG AAGTGATGAA CTTATTCAAT CCGACGACAC CGGCTCAGGT CTTCGACCAG
ATCCGGATTT CGATCGCGTC GCCGGAGAAA ATTCTGTCGT GGTCCTACGG CGAGATCAAA
AAGCCGGAGA CCATCAACTA CCGCACGTTC AAACCGGAGC GCGACGGCCT GTTCTGCGCC
CGCATCTTCG GGCCGATCAA GGATTACGAG TGCTTGTGCG GCAAGTACAA GCGCATGAAG
TACAAGGGCA TCATCTGCGA GAAGTGCTCG GTCGAGGTGA CGCTGTCGCG CGTGCGCCGC
GAGCGCATGG GCCATATCGA ACTGGCCGCG CCGGTTGCCC ATATCTGGTT TTTGAAGTCG
CTGCCGTCCC GTATCGGCCT TTTGCTCGAC ATGACGCTGA AGGATCTCGA GCGGATTCTC
TATTTCGAAT ACTACGTCGT TCTCGAGCCG GGTCTCACCG CGCTCAAGGA CCGGCAGTTG
CTGTCGGAAG AGGAATACCT TCGCGCGCAG GACGAGTACG GCCAGGACAG CTTTACCGCC
ATGATCGGCG CCGAAGCGAT CCGCGAACTG CTGAAGGGGC TTGAACTCGA GAGGCTCGAG
GCGGAACTGC GCGCCGAGAT GCAGGCGACC GAGTCCGACA TCAAGCACAA GAAGCTCGCC
AAGCGCCTGA AGATCGTCGA GGCCTTCCGC TTCTCCGGCA ACAAGCCGGA GTGGATGATC
CTCACCGTGG TGCCGGTGAT TCCGCCGGAT CTGCGTCCGC TGGTGCCGCT CGATGGCGGT
CGCTTCGCAA CCTCCGACCT CAACGACCTA TATCGCCGCG TCATCAACCG CAACAACCGC
CTGAAGCGGC TGATGGAGCT GCGCGCGCCC GACATCATCA TCCGCAACGA GAAGCGCATG
CTTCAGGAAG CGGTCGATGC GCTGTTCGAC AACGGCCGCC GCGGCCGCGT CATCACCGGC
GCCAACAAGC GCCCGCTGAA GTCGCTCGCC GATATGCTGA AGGGTAAGCA GGGACGGTTC
CGGCAGAACC TGCTCGGCAA GCGTGTCGAC TATTCCGGCC GCTCGGTCAT CGTCGTCGGT
CCCGAACTGA AGCTGCACCA GTGCGGCCTG CCGAAGAAGA TGGCGCTGGA GCTGTTCAAG
CCGTTCATCT ATTCGCGGCT CGATGCCAAG GGACTGTCCA CGACGGTGAA GCAGGCGAAG
AAGCTCGTTG AAAAGGAGCG TCCCGAGGTC TGGGATATTC TCGACGAGGT CATTCGCGAG
CATCCGGTGC TGCTGAACCG CGCGCCGACC TTGCATCGCC TCGGCATCCA GGCGTTCGAG
CCGGTGCTGA TCGAGGGCAA GGCGATCCAG CTTCACCCGC TGGTCTGCGC CGCCTTCAAC
GCCGACTTCG ACGGCGACCA GATGGCCGTG CACGTTCCGC TGTCGCTCGA GGCACAGCTC
GAAGCGCGCG TGCTGATGAT GTCGACCAAC AACATCCTGC ACCCGGCGAA CGGCCAGCCG
ATCATCGTGC CCAGCCAGGA CATCGTGCTC GGTCTCTACT ACCTCTCGAT CATGCGCGAG
GGTCTGCCCG GCGAGGGCAA GGTGTTCGGC GACATGGCTG AGCTGGAGCA TGCGCTTCAC
GCCAAGGTCA TCCACCTCCA CACCAAGATC AAGTATCGCT GGGATCACAT CGGCGAGGAT
GGCAAGCCGG TCAAGCGCCT GATCGACACC ACCGCCGGCC GCGTCATGCT CGGTCAAGTG
CTGCCGAAGT CGCCGAAGAT CTCGTTTGAC GCCATCAATA AGCTGATGAC CAAGCGCGAA
ATCTCCGGCG TGATCGATCA GGTCTATCGC CACTGCGGTC AGAAGGAGAC CGTGATCTTC
TGCGACCGGA TCATGGCGCT CGGCTTCTAC AACGCGTTCA AGGCTGGCAT CTCGTTCGGC
AAGGACGACA TGGTGGTGCC GCACTCGAAG TGGAAGATCG TCGATGCCAC GCGCTCGATG
GCCAAGGATT TCGAGCAGCA GTACAACGAC GGCTTGATCA CCCACGGCGA GAAGTACAAT
AAGGTCGTCG ACGCCTGGTC GAAGGCGACC GAGGAAATCG CCAAGGAGAT GATGAAGGAA
ATCTCCGCCG TTAAGAAGAA TCCGAAAGGC GGCGAGGCAC AGATCAACTC GATCTACATG
ATGGCTCACT CCGGTGCGCG TGGTTCGCCG GCGCAGATGC GTCAGCTTGC CGGTATGCGC
GGCCTGATGG CGAAGCCGTC GGGTGAAATC ATCGAGACGC CGATCATCTC CAACTTCAAG
GAAGGGCTGT CGGTTCTCGA ATACTTCAAC TCAACTCACG GCGCCCGCAA GGGTCTCGCG
GACACCGCGT TGAAGACCGC AAACTCGGGC TACCTGACCC GCCGTCTGGT CGATGTCGCT
CAGGACTGCA TCATCACGCA GGATGACTGC GGCACCAAGC TCGGCATCAA GATGCGCGCC
ATCGTTGATT CCGGCACGGT CGTTGCGTCG CTGGGCTCGC GCATCCTTGG CCGCACCGCA
TGTGAGGACA TCCGCGAGGC TGCGACCAAC AAGGTGCTGA TCAAGCGCAA CACCTTGATG
GAAGAAAGCC ATGTCGATCA GATTTCACGG GCCGGCATCC AGGAGGTCAA GATCCGCTCG
GCGCTGACCT GCGAGCTGGT CAACGGCATC TGCGGCAAGT GCTATGGCCG CGATCTGGCC
CGCGGTACAC CGGTCAATCA CGGTGAGGCG GTCGGCGTCA TCGCGGCGCA GTCGATCGGC
GAGCCCGGCA CGCAGCTTAC GATGCGTACG TTCCACATCG GCGGCGCGGC GCAGCTCAAC
GAGCAGTCGG TGATCGAGTC GAACTTCGAC GGCAAGATCA CGATCAGGAA CAAGGCGATC
GCGAGAAACG GCGAAGGTCA TCTGGTTGCG ATGGTACGCA ACATGGTGGT CGCGGTTGCC
GACGCGGATG GCACCGAGCG TGCGACGCAC CGCATCCAGT ACGGCGCGCG CATGCACGTC
GACGAAGGCG ATTTGGTCAA GCGCGGCCAG CGCATCGCTG AGTGGGATCC GTACTCCCGG
CCGATCCTGA CCGAGGTGGA GGGCACCATC GGATTCGAAG ACCTGGTCGA AGGTCAGTCG
ATCTCCGAAA CGCTCGACGA ATCCACCGGT ATCGCCAAGC GCATCGTCAT CGACTGGCGC
TCGACGCGCG GTGGTGCGGA TCTGCGCCCG GCCATCGTGA TCAAGGGCAA GGACGGCAAG
GTGCTGAAGC TGCCTCGTGG CGGCGACGCT CGCTACATGT TGTCGGTCGA CGCCATTCTG
TCGGTCGACG TCGGCGCCAA GGTGACGCCC GGCGATATCC TGGCGCGTAT CTCGACCGAG
AGCGCCAAGA CCCGCGACAT CACCGGCGGT CTGCCGCGGG TGGCCGAACT GTTCGAGGCC
CGCAGGCCGA AGGACGCTGC CATCATCGCG GAAATCGCCG GCACCATCCG GTTCGGCCGC
GACTACAAGA ACAAGCGCCG CATCTCGATC GAGCCGGTCG ACAAGGATGA GGAGGCCCGC
GAGTACCTCA TTCCGAAGGG CAAGCACATC CATCTGCAGG ATGGCGACAT CGTCGAGAAG
GGTGACTTCA TCGTCGAGGG CAATCCGGCG CCGCACGACA TTCTGGCGAT CAAGGGTATC
GAGGAACTCG CTGCCTATCT GGTCAACGAA ATCCAGGAAG TCTACCGGTT GCAGGGCGTG
CTCATCAACG ACAAGCACAT TGAGGTGATT GTCCGTCAGA TGCTTCAGAA GGTCGAGGTT
ACCGATCAGG GCGAGACCGA CATGATCTCG GGCGAGCAGA TCGACAAGAT CGAGTTCGAC
CGGCTCAACG TCAAGGCCAA GGAGGAGGGC AAGAAGATCG CGACCGGAAC GCCGGTCCTG
CTCGGCATCA CCAAGGCGAG CTTGCAGACC CGTTCGTTCT TCTCGGCGGC CTCGTTCCAG
GAGACCACGC GCGTACTCAC CGAAGCCGCC GTCAACGGCA AGGTGGACCC GCTCGAAGGT
CTCAAGGAAA ACGTCATCGT CGGCCGGTTG ATCCCGGCAG GCACCGGCGC GTCGATGGCC
AAGATCCGCG AAGTCGCGGT CAAGCGCGAC AAGCTGATTC TCGACGAGCG CGAGAAGCAG
GCGGCGATCG TGCCGTCGGC TCCGGAGGCC GAACCGCTGG CGCTTCCGCC GGCGGAGTAG
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| Protein sequence | MNQEVMNLFN PTTPAQVFDQ IRISIASPEK ILSWSYGEIK KPETINYRTF KPERDGLFCA
RIFGPIKDYE CLCGKYKRMK YKGIICEKCS VEVTLSRVRR ERMGHIELAA PVAHIWFLKS
LPSRIGLLLD MTLKDLERIL YFEYYVVLEP GLTALKDRQL LSEEEYLRAQ DEYGQDSFTA
MIGAEAIREL LKGLELERLE AELRAEMQAT ESDIKHKKLA KRLKIVEAFR FSGNKPEWMI
LTVVPVIPPD LRPLVPLDGG RFATSDLNDL YRRVINRNNR LKRLMELRAP DIIIRNEKRM
LQEAVDALFD NGRRGRVITG ANKRPLKSLA DMLKGKQGRF RQNLLGKRVD YSGRSVIVVG
PELKLHQCGL PKKMALELFK PFIYSRLDAK GLSTTVKQAK KLVEKERPEV WDILDEVIRE
HPVLLNRAPT LHRLGIQAFE PVLIEGKAIQ LHPLVCAAFN ADFDGDQMAV HVPLSLEAQL
EARVLMMSTN NILHPANGQP IIVPSQDIVL GLYYLSIMRE GLPGEGKVFG DMAELEHALH
AKVIHLHTKI KYRWDHIGED GKPVKRLIDT TAGRVMLGQV LPKSPKISFD AINKLMTKRE
ISGVIDQVYR HCGQKETVIF CDRIMALGFY NAFKAGISFG KDDMVVPHSK WKIVDATRSM
AKDFEQQYND GLITHGEKYN KVVDAWSKAT EEIAKEMMKE ISAVKKNPKG GEAQINSIYM
MAHSGARGSP AQMRQLAGMR GLMAKPSGEI IETPIISNFK EGLSVLEYFN STHGARKGLA
DTALKTANSG YLTRRLVDVA QDCIITQDDC GTKLGIKMRA IVDSGTVVAS LGSRILGRTA
CEDIREAATN KVLIKRNTLM EESHVDQISR AGIQEVKIRS ALTCELVNGI CGKCYGRDLA
RGTPVNHGEA VGVIAAQSIG EPGTQLTMRT FHIGGAAQLN EQSVIESNFD GKITIRNKAI
ARNGEGHLVA MVRNMVVAVA DADGTERATH RIQYGARMHV DEGDLVKRGQ RIAEWDPYSR
PILTEVEGTI GFEDLVEGQS ISETLDESTG IAKRIVIDWR STRGGADLRP AIVIKGKDGK
VLKLPRGGDA RYMLSVDAIL SVDVGAKVTP GDILARISTE SAKTRDITGG LPRVAELFEA
RRPKDAAIIA EIAGTIRFGR DYKNKRRISI EPVDKDEEAR EYLIPKGKHI HLQDGDIVEK
GDFIVEGNPA PHDILAIKGI EELAAYLVNE IQEVYRLQGV LINDKHIEVI VRQMLQKVEV
TDQGETDMIS GEQIDKIEFD RLNVKAKEEG KKIATGTPVL LGITKASLQT RSFFSAASFQ
ETTRVLTEAA VNGKVDPLEG LKENVIVGRL IPAGTGASMA KIREVAVKRD KLILDEREKQ
AAIVPSAPEA EPLALPPAE
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