| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1531 |
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| Symbol | rpoB |
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| ID | 4032624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1736159 |
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| End bp | 1740301 |
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| Gene Length | 4143 bp |
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| Protein Length | 1380 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637970007 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_576813 |
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| Protein GI | 92117084 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCAGC AGACGTTCAC CGGTCGCAAG CGGGTTCGCA AGTTTTTCGG GCATATTCGG
GAAGTCGCCG AGATGCCGAA CCTGATCGAG GTTCAGAAGG CGTCCTACGA CCAGTTCCTG
ATGGTCGACG AACCGGAGGG TGGCCGGCTC GACGAGGGAC TGCAGGCGGT TTTCAAGTCG
GTGTTTCCGA TCAACGACTT CTCGGGCACC TCGCAGCTCG AATTCGTGCG CTACGAGTTC
GAGGCGCCGA AGTACGACGT CGACGAGTGC CGCCAGCGCG GCATGACCTA TGCCGCCCCG
CTGAAGGTGA CGCTGCGCCT CATCGTGTTC GATATCGACG AGGAAACCGC CGCGAAGTCG
GTGAAGGACA TCAAGGAGCA GGACGTCTAC ATGGGCGACA TTCCGCTCAT GACCATGAAC
GGCACCTTCG TCGTCAACGG CACCGAGCGC GTCATCGTCT CGCAGATGCA TCGTTCGCCC
GGCGTGTTCT TCGATCACGA CAAGGGCAAG ACCCATTCGT CCGGCAAGCT GCTGTTCGCC
GCGCGCGTGA TTCCCTATCG CGGCTCATGG CTCGACATCG AGTTCGATGC CAAGGATATC
GTGTTCGCGC GCATCGACCG CCGCCGCAAG ATTCCGGTGA CCTCGCTGAT GTTCGCCCTC
GGCCTCGACG GCGAGGAGAT CCTGAGCACG TTCTACAAGA AGATCATATA CAAGCGCGCC
AAGTCCGGAA GCAATGCGGA CGGCTGGCGC GTACCCTATG ACCCGGTCCG CTTCCGCGGC
TACTCCACGT TGAATGACCT GATCGATGCC GACTCCGGCA AGGTCGTGCT CGAGGCCGGC
AAGAAGCTCA CGGTCCGCGC CGCCCGCCAG CTCCAGGAGA AGGGGCTGAA GGCGCTGCGC
ATGAGCGACG AGGAGCTGGT CGGCATGTAT CTCGCCGAGG ATCTCGTCAA TCCGAAGACC
GGCGAAATCT ATGCCGAAGC CGGCGAGGAA ATCACCGAGA AGTCGCTGAA GGCGCTGAAC
GAGCACGGCT ACAAGGAGCT GCCGCTGCTC GACATCGACC ACGTCAATGT CGGCCCCTAC
ATCCGCAACA CGCTCTCCGC CGACAAGAAC CTGACGCGCG AGGATGCGCT GTTCGACATC
TACCGGGTGA TGCGCCCGGG CGAGCCGCCG ACGCTGGAGT CGGCGCAGAA CATGTTCCAG
TCGCTGTTCT TCGACAGTGA GCGCTACGAC CTGTCCGCGG TCGGCCGCGT CAAGATGAAT
ATGCGCCTCG ACCTCGATGC GCCGGACACC TATCGCACGC TGCGCAAGGA AGACATCCTG
GCCGTCATCA AGACACTGGT CGACCTGCGC GACGGCAAGG GCGAGATCGA CGATATCGAC
CATCTCGGCA ACCGCCGCGT GCGCTCGGTC GGCGAACTGA TGGAAAATCA GTACCGCGTC
GGCCTCCTGC GCATGGAGCG CGCCATCAAG GAGCGCATGT CCTCGGTCGA TATCGACACC
GTGATGCCGC AGGACCTGAT CAACGCCAAG CCCGCGGCTG CCGCGGTGCG CGAGTTCTTC
GGCTCCTCGC AGCTCTCGCA GTTCATGGAC CAGACCAATC CGCTGTCGGA GATCACCCAC
AAGCGCCGCC TCTCGGCGCT CGGTCCGGGC GGTCTGACCC GCGAACGCGC CGGCTTCGAG
GTGCGCGACG TGCACCCGAC GCACTACGGC CGCATCTGCC CGATCGAGAC GCCGGAAGGT
CCCAACATCG GCCTCATCAA CTCGCTCGCG ACCTTCGCGC GCGTCAACAA ATACGGCTTC
GTCGAGACGC CGTATCGCAA GGTGAAGGAC GGCCGCGTCA CCGACGAGGT GGTCTATCTC
TCGGCGATGG AGGAGGGCCG CTATCACGTC GCGCAGGCCA ACCTGCCGCT CGACAACCGC
GGCCGTTTCA CCGAAGACCT CGTGGTCTGC CGTCATGCCG GCGAAGTGCT GCCGGTGACG
TCGGACAAGG TCGACTTCAT GGACGTGTCG CCCAAGCAGC TCGTCTCGGT CGCCGCGGCG
CTGATCCCGT TCCTCGAGAA CGACGACGCC AACCGCGCGC TGATGGGCTC GAACATGCAG
CGTCAGGCGG TGCCGCTGGT GCGCGCCGAG GCGCCGTTCG TCGGTACCGG CATGGAAGGC
GTGGTCGCCC GCGATTCGGG TGCTGCGATC GCCGCGCGCC GCTCGGGTAT CATCGACCAG
ATCGACGCCA CCCGCGTCGT CATCCGCGCC ACCGAGGATC TCGACCCGAC CAAGTCGGGC
GTCGATATCT ATCGTCTCAT GAAGTACCAG CGCTCGAACC AGTCGACCTG CATCAACCAG
CGTCCGCTGG TGAAGGTCGG CGACGTCGTC AAGAAAGGCG ATATCATCGC GGACGGTCCG
TCGACCGATC TCGGCGAACT CGCGCTCGGC CGCAACGTGC TGGTCGCGTT CATGCCGTGG
AACGGTTACA ACTTCGAGGA TTCGATCCTG CTCTCCGAGC GGATCGTCAA GGAAGACGTC
TTCACCTCGA TCCATATCGA GGAATTCGAG GTGATGGCCC GCGACACCAA GCTGGGCCCT
GAGGAAATCA CCCGCGACAT TCCGAACGTG TCGGAAGAGG CGCTGAAGAA CCTCGACGAA
GCCGGCATCG TCTACATCGG TGCCGAGGTG CGCGCGGGCG ACATCCTGGT CGGCAAGATC
ACGCCGAAGG GCGAAAGCCC GATGACGCCG GAAGAGAAGC TGTTGCGCGC CATCTTCGGC
GAGAAGGCCT CCGACGTCCG CGACACCAGC TTGCGGGTGC CGCCGGGCGT GCAGGGCACG
ATCGTCGAGG TCCGTGTCTT CAACCGTCAC GGCGTCGACA AGGACGAGCG CGCGCTGGCG
ATCGAGCGGG AAGAAATCGA GCGCCTCGCC AAGGACCGCG ACGACGAGCA GGCGATTCTC
GACCGCAACG TGTACGGCCG CCTCGCCGAT CTGCTCGAAA ACCGTCAGGG CATTGCCGGT
CCGAAGGGCT TCAAGAAGGA CACCAAGATC ACCCGCTCGG TGATCGAGGA ATATCCGAAG
TCGCAGTGGT GGCTGTTCGC GTCGCCGAAC GACAAGCTGA TGGCCGAGAT CGAGGCCATG
CGGAAGCAGT ACGACGAGTC GAAGAAGGGT CTCGAACAGC GGTTCCTCGA CAAGGTCGAG
AAGCTGCAGC GTGGCGACGA ATTGCCGCCC GGCGTGATGA AGATGGTCAA GGTCTTCGTC
GCGGTGAAGC GCAAGATTCA GCCCGGCGAC AAGATGGCCG GCCGCCACGG CAACAAGGGC
GTGGTGTCGA AGATCGTTCC GATCGAGGAC ATGCCGTTCC TCGAGGACGG CACCCACGCC
GACATCGTGC TCAATCCCCT CGGCGTGCCC TCGCGCATGA ACGTCGGCCA GATTCTCGAA
ACGCATCTCG GCTGGGCCTG CGCCGGCCTC GGCAGGCGGA TCGGGCAGGC CGTCGATGCC
TATCTCGCGA GCGCGAAGCA GGAAACCAAG CCGCTCAAGG AGACGCTCAA GAAGGTCTAC
GGCGACAACG AGACCATCAA GTCGCTCAAC GATCATGAAC TCGTCGAACT CGGCCGCAAT
CTCAGTCGCG GCGTGCCGAT CGCGACGCCT GTGTTCGACG GCGCCAAGGA AGCCGACATC
GAGCAGATGC TCGAGCTGGC GGGCATGGAC AAGTCGGGTC AGTCGACCGT CTACGACGGG
CGGACCGGCG ACACGTTCGA TCGCAAGGTC ACGGTGGGCT ATATCTACAT GCTCAAGCTG
CACCACCTTG TGGACGACAA GATCCACGCG CGCTCGATCG GACCTTACTC GCTTGTCACC
CAGCAGCCGC TGGGCGGCAA GGCGCAGTTC GGCGGCCAGC GTTTCGGCGA AATGGAGGTG
TGGGCGCTCG AGGCTTACGG CGCGGCGTAC ACGCTTCAGG AAATGCTGAC CGTGAAGTCG
GACGACGTCG CCGGCCGTAC CAAGGTCTAC GAGGCCATCG TGCGCGGCGA CGACACCTTC
GAGGCGGGCA TTCCGGAGTC GTTCAACGTG CTGGTCAAGG AAATGCGTTC GCTGGGCCTG
AATGTCGATC TGCACAATTC CAAGATCGGC AGCGCGACGC CGACGTCCGA GGCGGCCGAA
TGA
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| Protein sequence | MVQQTFTGRK RVRKFFGHIR EVAEMPNLIE VQKASYDQFL MVDEPEGGRL DEGLQAVFKS
VFPINDFSGT SQLEFVRYEF EAPKYDVDEC RQRGMTYAAP LKVTLRLIVF DIDEETAAKS
VKDIKEQDVY MGDIPLMTMN GTFVVNGTER VIVSQMHRSP GVFFDHDKGK THSSGKLLFA
ARVIPYRGSW LDIEFDAKDI VFARIDRRRK IPVTSLMFAL GLDGEEILST FYKKIIYKRA
KSGSNADGWR VPYDPVRFRG YSTLNDLIDA DSGKVVLEAG KKLTVRAARQ LQEKGLKALR
MSDEELVGMY LAEDLVNPKT GEIYAEAGEE ITEKSLKALN EHGYKELPLL DIDHVNVGPY
IRNTLSADKN LTREDALFDI YRVMRPGEPP TLESAQNMFQ SLFFDSERYD LSAVGRVKMN
MRLDLDAPDT YRTLRKEDIL AVIKTLVDLR DGKGEIDDID HLGNRRVRSV GELMENQYRV
GLLRMERAIK ERMSSVDIDT VMPQDLINAK PAAAAVREFF GSSQLSQFMD QTNPLSEITH
KRRLSALGPG GLTRERAGFE VRDVHPTHYG RICPIETPEG PNIGLINSLA TFARVNKYGF
VETPYRKVKD GRVTDEVVYL SAMEEGRYHV AQANLPLDNR GRFTEDLVVC RHAGEVLPVT
SDKVDFMDVS PKQLVSVAAA LIPFLENDDA NRALMGSNMQ RQAVPLVRAE APFVGTGMEG
VVARDSGAAI AARRSGIIDQ IDATRVVIRA TEDLDPTKSG VDIYRLMKYQ RSNQSTCINQ
RPLVKVGDVV KKGDIIADGP STDLGELALG RNVLVAFMPW NGYNFEDSIL LSERIVKEDV
FTSIHIEEFE VMARDTKLGP EEITRDIPNV SEEALKNLDE AGIVYIGAEV RAGDILVGKI
TPKGESPMTP EEKLLRAIFG EKASDVRDTS LRVPPGVQGT IVEVRVFNRH GVDKDERALA
IEREEIERLA KDRDDEQAIL DRNVYGRLAD LLENRQGIAG PKGFKKDTKI TRSVIEEYPK
SQWWLFASPN DKLMAEIEAM RKQYDESKKG LEQRFLDKVE KLQRGDELPP GVMKMVKVFV
AVKRKIQPGD KMAGRHGNKG VVSKIVPIED MPFLEDGTHA DIVLNPLGVP SRMNVGQILE
THLGWACAGL GRRIGQAVDA YLASAKQETK PLKETLKKVY GDNETIKSLN DHELVELGRN
LSRGVPIATP VFDGAKEADI EQMLELAGMD KSGQSTVYDG RTGDTFDRKV TVGYIYMLKL
HHLVDDKIHA RSIGPYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS
DDVAGRTKVY EAIVRGDDTF EAGIPESFNV LVKEMRSLGL NVDLHNSKIG SATPTSEAAE
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