| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1475 |
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| Symbol | |
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| ID | 4032876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 1675792 |
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| End bp | 1677402 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637969949 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_576757 |
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| Protein GI | 92117028 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.153349 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTACGC TCCAGATGAT GCCGCCGATG ATGTTCGGCG GCCTGGTTCT GGCGATGTTG
ATCGGCTTTC CGGTGGCCTT CACGCTGGCT GCGGTCGGGC TCTCATTCGG ATTCCTCGCC
ATCCATCTTG GCTTCTTCGA CCTGAATTTC CTTCAGGCCA TTCCGGGGCG CGTGTTCGGC
AGCGTGCTGT CCAACGAATT GTTGCTCGCG ATTCCGTTTT TCACGTTCAT GGGATCGGTG
CTTGAGCGCT GTGGTCTCGC GGAGGACATG CTCGACTCGA TGGGCCAACT GTTCGGGCCA
ATCCGCGGCG GCCTGGGATA TTCGGTCATT CTTGTCGGAT TCATCCTCGG CGCCATCACC
GGCACGGTCG CCGCTCAGGT GATCGCCATG GCGCTCATCT CGATGCCCGT GATGATGCGG
TACGGCTACA ACATGCGCTA CATCACGGGC GTGCTGGCGG CATCCGGCAC CATCACCCAG
CTCGTCCCGC CCTCGCTGGT GCTGATCGTG CTCGCCGACC AGCTCGGAAA GTCGGTCGGC
GATATGTATC TCGGTGCCTG GGGGCCTTCG CTGTTCCAGA TCGTGCTGTT CGTCGGCTAC
ACGTTCGTGC TCGGCCTTAT CAAACCCGAT CATGTCCCCC CGGTGCCGAA GGAATTCCGC
ACGCTCGCCG GCTGGCCGCT TTGGCGCAAA TGCTTGATGG GCATCATTCC CTCCGCCGTC
CTGATCTTCG TCGTGCTCGG CACCATGATG ATGGGGCTTG CGACGCCGAC GGAAGCAGGA
GCAATGGGCG CCGTCGGCGC GATCGTGCTG GCGTCCATTC ACCACAAGGA TTTCAGCAGC
ACCGGCCGAA AATTCCTGAT CATCGGCGCG ATCGCCGGCG GCATCGGCAC GCTCGTCGGG
ATCTTCGTGA CCGAGGGACC GGTCTTCAAG ATCGCGTTCG CCGTCACCTA TCTCGCGGTC
GTGTGGATCT GTCTGGAAGC CGTCCGCATT CCCGAGCTTC GCGACCTCAT CAAGCAGGCC
TATCAATCGA CGATGCGCCT CACCACCATG GTGACGTTCA TCCTGATCGG CTCGACCTGT
TTCTCAGTGG TGTTTCTCGG CGTATCCGGC GGCGAGTGGC TCGAACACCT GCTGACATCG
CTGCCAGGCG GCGCGTGGGG CTTTCTCGTC TTCATCAACG TCTTCATCTT CTTCCTGGCG
TTTTTCCTCG ATTTCTTCGA GATCGCCTTC ATCATCCTGC CGATGATCGC GCCGGTGGCC
CAGAAGCTTC TCGCTCCGAT CGTCGGCGCG GACGCCGCCT TGATCTGGTT CGGCGTCATG
ATCTGCGTCA ACATGCAGAC CTCGTTCCTC CACCCTCCAT TCGGCTTCGC ATTGTTCTAC
CTGCGCGGCG TCGCGCCGCG CGAGGTCAAG AGCTCCGACA TCTACTGGGG CGCTGTGCCC
TGGATCGGAT TGCAGGTCAT CATGGTCGTT CTTGTGATCG CGTTCCCCAC GACGGTGACG
AGCCTGCTCA GCAAACCGAC AAACGTCGAT CTGAACAAGA TCAAGATCGA GGTCCCCGAT
ATCGAGATGG CACCGCTCGA TTTCGGTCCA CCGCCGAAAA CACGGCAATA G
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| Protein sequence | MITLQMMPPM MFGGLVLAML IGFPVAFTLA AVGLSFGFLA IHLGFFDLNF LQAIPGRVFG
SVLSNELLLA IPFFTFMGSV LERCGLAEDM LDSMGQLFGP IRGGLGYSVI LVGFILGAIT
GTVAAQVIAM ALISMPVMMR YGYNMRYITG VLAASGTITQ LVPPSLVLIV LADQLGKSVG
DMYLGAWGPS LFQIVLFVGY TFVLGLIKPD HVPPVPKEFR TLAGWPLWRK CLMGIIPSAV
LIFVVLGTMM MGLATPTEAG AMGAVGAIVL ASIHHKDFSS TGRKFLIIGA IAGGIGTLVG
IFVTEGPVFK IAFAVTYLAV VWICLEAVRI PELRDLIKQA YQSTMRLTTM VTFILIGSTC
FSVVFLGVSG GEWLEHLLTS LPGGAWGFLV FINVFIFFLA FFLDFFEIAF IILPMIAPVA
QKLLAPIVGA DAALIWFGVM ICVNMQTSFL HPPFGFALFY LRGVAPREVK SSDIYWGAVP
WIGLQVIMVV LVIAFPTTVT SLLSKPTNVD LNKIKIEVPD IEMAPLDFGP PPKTRQ
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