| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1467 |
|---|
| Symbol | |
|---|
| ID | 4032868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1665784 |
|---|
| End bp | 1667724 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637969941 |
|---|
| Product | 4-alpha-glucanotransferase |
|---|
| Protein accession | YP_576749 |
|---|
| Protein GI | 92117020 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1640] 4-alpha-glucanotransferase |
|---|
| TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTTT ATTCAAAAGC GCGCGACCTT GGCATCGATC TGGAATTTGT GGACGGGCAG
GGCCTCCGCC ATGTGGTGAA CGGCGAGCGG CTGCGTGCCA TTCTCGATGG TTTGCCATCC
CCTTCGCGAC ATCCCTATCT GAAGCAACCC GTTGTTATCG TCGCCGACGG CGGCGATTGT
CGTGTGCCGG TGGACGCCGA AGCAAACGGA ATCGGTTGGC GGCTCGTTGA ACGAAACGCG
GTGCTTGCGC GAGGACGTGT GGCCGGGGAG GCGATCGACT TGCCGCGTTC GGCGGCAATC
GGCACCTATC GGCTGGAGCT TGTGAGCGAT AACGGGGATA CGATCGATTC GATCCCGTTG
CTGGTGACGC CGGCGGCCGC CTATCAGGGC TCGTTCGACC GGGTCTGGGT GCTGTCGGTT
CAACTCTACG GGGTATCGTC GTCGGGCAAT TGGGGAATTG GCGATTTCAC GGACCTCGCC
GCGCTGATCG AATTGACCGC GGATTGGGGC TGCGCGGGAA TCGGACTCAA TCCGCTTCAT
GCGTTGTTCG ATGACCGGCC TCTCGAATGC AGCCCCTATG CGCCGAACAG CCGGTTGTTC
CTCAATCCGC TTTACATCGA TCCCGAGCGG TTGCCGGATT TTCCGGGTGC TTGGCTGGCG
CAGCATCGTG AGCAACTTGG TCAGGCCCGC CACGGCGAAC TGATCGACTA CGCGGCCGTC
GCGGAATTGA AATTCGCCGC GCTCCGGCAC GCGTTTTCGA TCTTCCGGCG CGGACGCTCA
CAGTCCGAAT TCGAAATCTT CAGGCAGGAG CGCGGCGAAC TGCTGCAACG CTTTGCCTGC
TTCGAAGTGC TGCGGCGGCA ATTCGGTCCA TTGCCGTGGT GGCAATGGCC GGAGGAATGG
CGTCGCCCCG ACGACGCGCG GATTCAGGCC TTTCGAAACG GTTTGCTGCG TGCCGAGGTT
GAATTCGTCG AGTTCGTGCA ATGGTGCGCG GCGGCGCAGT TGCAGTCATG CGCCGATCTT
GCCGCTGAAC GCGGAATGGC GGTCGGCCTT TATCTCGATG TTGCCGTCGG GGTTCAGGCC
GGCGGGTTCG ACGCCTGGAA CGAGCAGGGT GCCATCTCGC GCGGGCTTTC GGTTGGTGCG
CCGCCCGATC AGCTCAACAC GACCGGACAA GACTGGGGAC TGGCGGGGTT TAATACCGCT
GGACTCGAGG CGAGCGGCTT CGCACCGTTT CGGGAGATGC TGCGCGCCTC GATGCGTTTC
GCGGGCGCGA TACGACTGGA TCACGTCCTC GGCCTCAACC GGCTTTATCT GATACCGTCC
GGTGCGTCGC CGCGGGATGG CGTGTATGTG GAGATGCCGT TGGAGGCGCT GCTCGGCGTC
ATCGCGCAGG AGAGCGTCGG CCAGCGCTGC ATCACGATCG GGGAGGATCT GGGAACGGTG
CCGGACGGCT TTCGCGACAT TCTCGCGGCT TGGGGCGTGT GGTCCTACAA GGTGATGATG
TTCGAGCGCG GTCATGACGG CGCTTTTATC GGGCCGTCGG GTTATGCCGC GAACGCCCTT
GTCACTTTCA ACACGCATGA TCTTGCATCG TTTGCAGGCT GGCAATCGCA CTCCGATCTC
AGGGTCAAGC GAGAGCTTGG TCTCGATCCC GGCGAGACGG ACGCGATGCG GGCGGATGCG
CTCCGTGCGT TCGAATGGAA GCTCCGCGAA GACCATATCG CGTCGAAGAA TTTTTTCGGA
GCCGTCGAAT TTCTAGCGCA CACGCCGTCG CGCATTCTTG CGGTCGCGCT CGACGATCTG
ATCGGATTGA AGGATCAGCC GAACATTCCA GGAACGGTGA ATGAGCACCC CAACTGGCGG
CGGCGGCTTC CGGTTGATCT GAACGATCTC GGCCGCTGCA TCGATCTCGA CGCACTTCGG
CACGCGCTCC GCGACCGCTG A
|
|---|
| Protein sequence | MDVYSKARDL GIDLEFVDGQ GLRHVVNGER LRAILDGLPS PSRHPYLKQP VVIVADGGDC
RVPVDAEANG IGWRLVERNA VLARGRVAGE AIDLPRSAAI GTYRLELVSD NGDTIDSIPL
LVTPAAAYQG SFDRVWVLSV QLYGVSSSGN WGIGDFTDLA ALIELTADWG CAGIGLNPLH
ALFDDRPLEC SPYAPNSRLF LNPLYIDPER LPDFPGAWLA QHREQLGQAR HGELIDYAAV
AELKFAALRH AFSIFRRGRS QSEFEIFRQE RGELLQRFAC FEVLRRQFGP LPWWQWPEEW
RRPDDARIQA FRNGLLRAEV EFVEFVQWCA AAQLQSCADL AAERGMAVGL YLDVAVGVQA
GGFDAWNEQG AISRGLSVGA PPDQLNTTGQ DWGLAGFNTA GLEASGFAPF REMLRASMRF
AGAIRLDHVL GLNRLYLIPS GASPRDGVYV EMPLEALLGV IAQESVGQRC ITIGEDLGTV
PDGFRDILAA WGVWSYKVMM FERGHDGAFI GPSGYAANAL VTFNTHDLAS FAGWQSHSDL
RVKRELGLDP GETDAMRADA LRAFEWKLRE DHIASKNFFG AVEFLAHTPS RILAVALDDL
IGLKDQPNIP GTVNEHPNWR RRLPVDLNDL GRCIDLDALR HALRDR
|
|---|
| |