| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1290 |
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| Symbol | |
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| ID | 4032131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1453345 |
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| End bp | 1455489 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637969767 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_576575 |
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| Protein GI | 92116846 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.67847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCAA AGCCCAAAAC GCCTCCGCCC GTCGATTCCC TCACGAGGGC GCAGGCGAAG
ATCGAGCACA AGCGGCTCGC GCTCGAGATC GAAACGCATA ACGAGCGCTA CTACCAGAAG
GATGCGCCGA CGGTTTCCGA CGCCGCCTAC GATGCGCTGC GGCAGCGGCT TGAAGCAATC
GAGGCGCGCT TCCCCGATCT GATTACTGCC AATTCGCCGA CTCAGACGGT CGGCGCCGCC
CCCGCGCGCG GCTTCGCAAA GGTGCAGCAC GCGGTGCCGA TGCTATCGCT CGGCAACGCC
TTCAGCGACG AGGAAGTCGC TGAATTCGTC GAACGCATCC AGCGTTTCCT GAAACTTGGG
CCAGACGACA TTCCCGCCAT CGTCGCCGAG CCGAAGATCG ACGGACTGTC GCTGTCGCTA
CGTTATGAAA ACGGTGAGCT TGTGCGCGCG GCCACCCGCG GCGACGGCTT CACCGGCGAG
GACGTCACTG CCAATGTGCG TACCATCAAG GACGTTCCGC ACAACCTAAG AGGCCGCAAC
ATCCCAACCG CCTGCGAGCT GCGCGGCGAA GTTTATATGC TCAAGACCGA CTTTCTCGCG
CTGAATAAAA AGCAGGAGGA TGCCGGCGAC ACCGTATTCG CCAACCCGCG CAACTCGGCC
GCCGGCTCGC TCCGGCAGAA GGATGTTGCG ATCACCGCGT CGCGGCCGCT GAAATTCTTC
GCCTATGCCT GGGGCGAGAT GACGGATCGA CCCGCCGACA CCCAACACGA CATGCTGGAG
TGGCTCAAGG ACGTCGGCTT CAAAGTCAAT CCGCTGATCG AATTGTGCAA CAGCGTCGAG
AAGGTGCTGA AGTTCTACCG CAAGATCGGC GAGCAGCGCG CTTCCCTCGG CTACGACATC
GACGGCGTCG TCTACAAGGT CGACCGGCTC GACTGGCAGG AGCGCCTCGG CTTCGTGTCG
CGCTCGCCGC GCTGGGCCAT TGCGCACAAG TTCGCCGCCG AGCAGGCGAC CACGATCCTC
AAGGGTATCG ACATCCAGGT CGGCCGCACC GGCGCGATGA CGCCGGTGGC GCGGCTCGAA
CCCGTCACCA TCGGCGGCGT TGTCGTGCAG AACGCCACGC TGCACAACGA AGATTACATC
AAAGGCATCG GCAATGACGG CCAGCCGATC CGCGACGGCG TCGATCTCCG CGTCGGCGAT
ACCGTGGTGG TGCAGCGCGC CGGCGACGTG ATACCGCAAG TGGTCAGCGT CGTCATCGAC
AAGCGGCCGA ACAGCGCACA GCCTTACGCG TTTCCGCATA CGTGCCCGAT CTGCGGCAGC
CACGCCGTGC GCGAGGAGGG CGAGGCGGTG CGCCGCTGCA CCGGCGCGCT GATCTGCCCG
GCGCAGGCGG TGGAGCGGCT CAAGCATTTC GTCTCGCGTC TCGCCTTCGA TATCGACGGT
CTCGGCGAGA AGCAGATTCA GGAATTTCAC GAGCGGGGCT GGATCAAGGA GCCGGCCGAT
ATCTTCACGC TCAGGGAACG CAATCCAAAG ATCAAGCTTG AGGAGCTTGA GGGCTTTGGC
GAAGTCTCGG TGCGTAACCT GTTCGCTGCG ATCGATGCGC GCCGCACGAT CGAACTCAAC
CGGCTAATCT TCGCGCTCGG CATCCGCCAC GTCGGCGAAG GTAATGCCAA ATTACTGGCG
CGGCATTACG GCGGCATCGA CGCATTCCGC GCGGCGATGA GCGAAGCCGC TGCGGCGCAG
ACCGACGATG GCAACGCCTC CGAGGCCTAT GCCGATCTCA ACAACATCAG CGGTATCGGC
GATATCGTGG CTGACGCGGT GGTCGAGTTC TTCGCGGAGA CGCGCAACGT CAAGGCGCTG
AACGATCTGC TTGAGGAAAT CGAGGTGCTG CCGGTCGCGC AAGCGCGCAA CGATTCCGCC
GTTGCCGGCA AGACCGTGGT GTTCACGGGC TCGCTGGAAA AATTCACCCG CGACGAGGCC
AAGGCCTCAG CCGAGCGCAT GGGCGCGAAG GTTTCGGGCT CGGTGTCGAA GAAGACCGAT
CTCGTCGTCG CCGGCCCCGG CGCGGGATCG AAGCTGAAGG ACGCGGAGAA GCACGGCGTC
CAGGTTATCT CCGAAGACGA GTGGCTAAAG CTGATCGAGG GGTAG
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| Protein sequence | MAAKPKTPPP VDSLTRAQAK IEHKRLALEI ETHNERYYQK DAPTVSDAAY DALRQRLEAI
EARFPDLITA NSPTQTVGAA PARGFAKVQH AVPMLSLGNA FSDEEVAEFV ERIQRFLKLG
PDDIPAIVAE PKIDGLSLSL RYENGELVRA ATRGDGFTGE DVTANVRTIK DVPHNLRGRN
IPTACELRGE VYMLKTDFLA LNKKQEDAGD TVFANPRNSA AGSLRQKDVA ITASRPLKFF
AYAWGEMTDR PADTQHDMLE WLKDVGFKVN PLIELCNSVE KVLKFYRKIG EQRASLGYDI
DGVVYKVDRL DWQERLGFVS RSPRWAIAHK FAAEQATTIL KGIDIQVGRT GAMTPVARLE
PVTIGGVVVQ NATLHNEDYI KGIGNDGQPI RDGVDLRVGD TVVVQRAGDV IPQVVSVVID
KRPNSAQPYA FPHTCPICGS HAVREEGEAV RRCTGALICP AQAVERLKHF VSRLAFDIDG
LGEKQIQEFH ERGWIKEPAD IFTLRERNPK IKLEELEGFG EVSVRNLFAA IDARRTIELN
RLIFALGIRH VGEGNAKLLA RHYGGIDAFR AAMSEAAAAQ TDDGNASEAY ADLNNISGIG
DIVADAVVEF FAETRNVKAL NDLLEEIEVL PVAQARNDSA VAGKTVVFTG SLEKFTRDEA
KASAERMGAK VSGSVSKKTD LVVAGPGAGS KLKDAEKHGV QVISEDEWLK LIEG
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