| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1241 |
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| Symbol | |
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| ID | 4032235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1397792 |
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| End bp | 1400488 |
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| Gene Length | 2697 bp |
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| Protein Length | 898 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637969720 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_576529 |
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| Protein GI | 92116800 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.131073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGGCA AGGATTGGCA GGCGGGCGGC AAGGGCGGCA AGAGCGTCGC TGCTGCGGTG
GGGCTCGTAT ACGCCGCTGT CGCTGCGGCG CCCGCGAGCG CGTGGGCTGC GGCCATCGGA
TTGTCGACGG ACAATCATAT TACCGGGACC GATGCCGGCG TGGCTTGGGA AATTTTCACC
GGCGGCTTTA TTGCCGTTTC CTTTTTGGCG GCGGCCGCCA TCTGGGTGAC GTCCGTGCTG
CGCAAGGCCA GGCGCTCTCT GCGCAGACAC GCATTCGTCA GCTCTGGGCT GAACAATCTC
AACCAGGGCG TGGTGATGAC GGATTCGCGT CAGCGGATCA TTTTCTGCAA CGACCGCTAT
CTCGAAATCT ATGGATTGCT TCGATCGGAT ATCCGCCCGG CTATGACGGA CCCCGAACTT
GGCGATCTGC GGCGCGCGCG CGGTGTGCTC GACGCCTGCA GTGACCAGTT CTATCGATTG
TCGAATGCCT GCGATGGCCT CTTCACCGAA CTGCCCGACG GGCGTTTGAT CGCAGTGAAG
CGGTTCAAGC TGCCGAACGG CGGCTCGGTT GCGACGCACG AGGATTGCAG CGAGCAGCGC
AAGCTCGCCA GGCAACTGGC GACCACCAAG CAGTTTCTGG AATCGGTCAT CGACAACGTG
CCGGTGTGTA TCGCCGCCAA GGGTATCGAA GACGGCCGCT ACATTCTGGT CAACCGCGCC
TTCGAGCGTT TCTCCCGCGT CTCGCGCGAT TTCATCGTCG GCAGGCGCGC CGATGAAATC
TTCCAACCCC AGACGGCCGC CAATATCGCC GCGACCGACC AGGTCGCGCT GGCCTCGCCC
GACAGTCATT ACTACAGCGA AATGGTATTT GAGCGGGGCT CGGAGAAGCG CACGCTCGCC
AATAACAAGG TGGTCGCCCG CAACGAGGCC GGTCAGCCGG TGTTTCTGAT CGCCCTGTTC
GAGGATGTGA CCGAGCGCAA GTCGCTGTCG CGCGAGCTGG AGAACGCCAA GAAGTTCCTC
GAAACCGTCG TCGACAACAT TCCGGTGTCG CTGATCGTTC AGTGCGCCAG CGACGGCCAT
TACCTGCTCG CCAACCGCCG GGCCGAGACG ATTCTCAATC GCCGCCGCGA GGATGCAATC
GGGCTGACCG CATCCGATAT CTTCGGTCCG CGCGATGCGA AGCTGATCGT TGCCCGCGAC
GAAATGGCGG TCGGGAATGG CGGTCTTTTG ACCGAAGAGC ACCCGATCCG CACCAGCGAA
GGGCTGCGGT TGTTCCTGAC CCGCCGCGTT ACGGTGCGCG GCGATGACGG CGAACCGCAG
TATCTGATCA AGACGAACGA GGATGTGACC GATCGTCGCC AGACCGAGTC GCGCATGGCG
CACATGGCCT ATCACGACGG GCTGACCGAT CTGCCGAACC GCACCGCGTT CCTGAAAGCG
CTGTCGCAGA TGATCGAGGC GTGTCAGGGC ACGGACGATG AGTTCGCGGT GCTGTCGCTC
GATCTTGACG GCCTCAAGGA GATCAACGAC GTATTCGGCC ACGCGGTCGG CGACAGCCTG
CTGATCGAGG TGGCGCGCCG CATTCAGAGC GCGGCGCATG GCGGCCTCGT TGCCCGGCTC
AGCGGCGACG AGTTCGGTGT GATCATTGAT GGCAAGCAGC CCGCCGTTGG CCAGGCGCTC
GCCCAACAGA TCGTCGCGGC AATGGTTCCG GAATTTCTGA TTGATGATAA ATCCGTCCGG
ACGGGCCTTA CCACCGGCAT TTCGCTGTTC CCGCGCGACG GGACCGATCC CGCATCGCTG
CTCGCCAATG CCGGCGTCGC ATTGTTCCGC GCCAAGGCGA AATCGCGCGG CTCCATCTGC
GTGTTCGAAC CGGAAATGGA TCGGCAGATC CGGGATCGCC GCGTGCTGCA CCGGGATCTG
TCGAACGCCA TGCGGAACGG CGAACTGTCG CTGCACTATC AGCCGCAGGC ACGCACGGGC
CGCAAGCTCG TTGATGACGA TGTGATCGGC TTCGAGGCGC TGACGCGATG GAGTCATCCG
ACCCGCGGCT TCGTTCCGCC CGGCGATTTC ATTCCGCTCG CGGAGGAGAG CGGCCTGATC
GTGGCAATGG GCGAGTGGAT TCTGCGCGAG GCGTGCCGAG AGGCGGCGTC CTGGCCGAGC
CCGAAGCAGA TCGCGGTCAA CCTGTCGCCG GTGCAGTTCA TTCACGGCGA CCTGGTCGGC
CTCGTGCACT CTATTCTGCT GGAAACCGGA CTCAATCCAA GCCGGCTGGA ACTGGAAATC
ACCGAAGGCG TGCTGATCGA GGACTTTGAG CGCAGCCTGG CGCTGCTGCG GCGGCTGAAA
GCGCTGGGCG TTCGCATCGC GATGGACGAT TTCGGCAGCG GCTATTCGTC GCTGAGCTAC
TTCCAGGCGT TCCCGTTCGA CAAGATCAAG ATCGACCGTG GGTTCGTCAT GTATCTCGGA
CGCAATCCGC AGTCCGCGGC GATCGTCCGG GCGGTGATCG GCCTCGGCCA CGGCCTCGAC
GTATCGATCG TCGCGGAAGG CGTCGAGACG CAGGAGCAAC TCGGCTTCCT CGCCGACGAG
GGCTGCGACG CGGTCCAGGG CTTTTTCATC GGCAAACCGG AGCCGATCGC GCATTACGCC
ACCCTGGTCG GGCGTCCGCC CCGCATTCCC GAAGCGATCC GCCGCAAGGC CGGCTGA
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| Protein sequence | MTGKDWQAGG KGGKSVAAAV GLVYAAVAAA PASAWAAAIG LSTDNHITGT DAGVAWEIFT
GGFIAVSFLA AAAIWVTSVL RKARRSLRRH AFVSSGLNNL NQGVVMTDSR QRIIFCNDRY
LEIYGLLRSD IRPAMTDPEL GDLRRARGVL DACSDQFYRL SNACDGLFTE LPDGRLIAVK
RFKLPNGGSV ATHEDCSEQR KLARQLATTK QFLESVIDNV PVCIAAKGIE DGRYILVNRA
FERFSRVSRD FIVGRRADEI FQPQTAANIA ATDQVALASP DSHYYSEMVF ERGSEKRTLA
NNKVVARNEA GQPVFLIALF EDVTERKSLS RELENAKKFL ETVVDNIPVS LIVQCASDGH
YLLANRRAET ILNRRREDAI GLTASDIFGP RDAKLIVARD EMAVGNGGLL TEEHPIRTSE
GLRLFLTRRV TVRGDDGEPQ YLIKTNEDVT DRRQTESRMA HMAYHDGLTD LPNRTAFLKA
LSQMIEACQG TDDEFAVLSL DLDGLKEIND VFGHAVGDSL LIEVARRIQS AAHGGLVARL
SGDEFGVIID GKQPAVGQAL AQQIVAAMVP EFLIDDKSVR TGLTTGISLF PRDGTDPASL
LANAGVALFR AKAKSRGSIC VFEPEMDRQI RDRRVLHRDL SNAMRNGELS LHYQPQARTG
RKLVDDDVIG FEALTRWSHP TRGFVPPGDF IPLAEESGLI VAMGEWILRE ACREAASWPS
PKQIAVNLSP VQFIHGDLVG LVHSILLETG LNPSRLELEI TEGVLIEDFE RSLALLRRLK
ALGVRIAMDD FGSGYSSLSY FQAFPFDKIK IDRGFVMYLG RNPQSAAIVR AVIGLGHGLD
VSIVAEGVET QEQLGFLADE GCDAVQGFFI GKPEPIAHYA TLVGRPPRIP EAIRRKAG
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