| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1109 |
|---|
| Symbol | |
|---|
| ID | 4031598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1253631 |
|---|
| End bp | 1254488 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637969606 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_576416 |
|---|
| Protein GI | 92116687 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGACAG CCGAGACCAA AGGCCGCGCC GCCTGCCTGA TCGGATGGCC TGCCGCGCAT
TCGCGCTCGC CGCTGATCCA TCACTACTGG CTGCGCTTGC ACGGAATCGC GGGCGGCTAC
AACATCGAGG CGATTCCGCC CGAGGGCCTT GCCGAATTCA TCATGCATCT GTCGACGCAC
GGCTTCGTCG GCGCCAATGT CACGATTCCG CACAAGGAGC GGGCGCTGCA ACTGACCGCG
CCCGACGAGC GCGCCAGGGC AATCGGCGCC GCCAACACGC TTTATTATGA TGGTAAGACC
CTGCGGTCCA CCAATACCGA CGTCGAGGGT TTCATCGGCA ATCTGGATGC CGCCGCGCCG
GGCTGGGATC GCACCGGGGA TGCGCTGGTG CTTGGCGCCG GCGGGTCGTC CCGGGCCGTG
GTGTTCGGCC TGATCGAACG CGGCATCAAG CGCATCCATC TCGTCAACCG CACGATGGAG
CGGGCGCAGG CGCTCGCGGA TCAATTCGGC GCGACGGTTA TGCCGTTGGC CTGGAGCGGG
CTCGGCGACG TGCTGCCGCG CGCTGGTCTG CTCGTGAATA CCACCTCGCT CGGCATGAAG
GGGCAGCCGC CGCTGGATAT CGAACTGCCG CTGCTGCCGC TGGATGCGGT GGTCGCCGAT
CTGGTCTATG TGCCGCTGGA AACGCCGCTG CTTGCGGCGG CGAGGGCGCG GGGCCTCAGA
ACCGCCGACG GCCTCGGCAT GCTGCTGCAT CAGGCGGTGC GTGGATTCGA GCTGTGGTTC
GGGCAGCGTC CCGCGGTGTC GCCGGAATTG CGCGCGCTGG TCGAGGCCGA CCTCCGGATA
CCTCATCCCG CGACTTGA
|
|---|
| Protein sequence | MMTAETKGRA ACLIGWPAAH SRSPLIHHYW LRLHGIAGGY NIEAIPPEGL AEFIMHLSTH
GFVGANVTIP HKERALQLTA PDERARAIGA ANTLYYDGKT LRSTNTDVEG FIGNLDAAAP
GWDRTGDALV LGAGGSSRAV VFGLIERGIK RIHLVNRTME RAQALADQFG ATVMPLAWSG
LGDVLPRAGL LVNTTSLGMK GQPPLDIELP LLPLDAVVAD LVYVPLETPL LAAARARGLR
TADGLGMLLH QAVRGFELWF GQRPAVSPEL RALVEADLRI PHPAT
|
|---|
| |