| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1090 |
|---|
| Symbol | glpD |
|---|
| ID | 4031618 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1230688 |
|---|
| End bp | 1232232 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637969588 |
|---|
| Product | glycerol-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_576398 |
|---|
| Protein GI | 92116669 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGTCAGG TTTTCGACCT CGCTATCATC GGCGGCGGCA TTAACGGGTG CGGGATCGCG
CGCGACGCGG CGGGTCGCGG CAATTCGGTC TTCCTGTGCG AAATGAACGA TCTCGCCAGC
GGCACCTCGT CGCTGTCGAC CAAGCTCGTA CATGGCGGGC TGCGCTATCT CGAATATTAT
GAATTCCATC TGGTTCGCGA GGCGCTGATC GAGCGCGAAA TCCTCTGGCG GATCGCGCCC
CACATCATCC GCCCGCTGCG CTTCGTGCTG CCGCATCACG CGGGCTTGCG GCCGACATGG
CTGCTGCGGC TCGGCCTGTT CCTTTACGAT CACATCGGCG GGCGCAAGCT GCTGCCGCCG
ACGCGCTCGC TCGACCTTAA GCGCGACGAG GTCGGCAAGC CGCTGGTCCC CGGCCGCTAC
CGCAAGGGTT TCGAATATTC GGACTGCTTC GTCGACGACG CCCGCCTCGT CGTCCTCACC
GCCCGCGATG CGGCCGATCG CGGCGCGGAT ATCCGGACCC GGACGCGCGC GGTCGAGACC
CGTCAGACCG GCGGCCTCTG GCACCTCACG GTCGAGGACA CGCTGAGCGG AGAACGCAGC
ACCATCGCGG CGCGGGTGCT GGTCAACGCG GGCGGCCCGT GGGTCGAACG GGTGCTGGGG
CTCGGCGCCG GCGTCAACAC TCGCGCAAGA GTGCGGCTGG TGCAGGGTTC GCACATCGTG
GTCGGAAAGC TTTACGACCA CGACCGCGCC TACATCTTCC AGAACAGCGA CGGCCGGATC
GTGTTCGCGA TTCCGTATCA GGACGATTTC ACCCTGATCG GCACCACCGA TCGCGATTAC
GACGGCGATC CCGCCAGGGT GAAGGCCTCG GACGAGGAGA TCGCCTATCT CTGCGCGTCC
GTCAGCGAGT ATCTGGCGAA GCCGGTGAAG CCGCAGGACG TGGTCTGGAC CTATGCCGGC
GTGCGGCCGC TCTACGACGA CGGCGCCAGC GAGGCCAAGG CCGCGACCCG CGAATATGTC
TTCGAACTCG ATACGCCCGG CGGCACGCCG CTGCTCTCGG TCTACGGTGG CAAGATCACG
ACCCATCGCC GGCTCGCAGA AGAAGCGCTG GAAAAGCTGT CGGCCTATCT GAAGGGCACC
AAAGCGCGCG AGGGCTGGAC CGCGAAGGCG CCGCTGCCGG GCGGCGACAT GGCCGTGCCG
GCGGTCGCGG CGCTGACGGC GGCGTTGATG CGCGACTATC CTTACCTCGC GCCGGCGCAC
GCGAACCGTC TCGCGCACGC CTATGGCACC CGCGCGGCCA AGGTGCTGGG CGCGGCGAAA
TCCATGGCCG ATCTCGGTCG GGGATTCGGC GGCACACTGA CCGAGCGCGA GGTCCGCTAT
TTAATCTCCG ACGAATGGGC CTGCACTGCG GACGACATCG TCTGGCGGCG CTCCAAGCTG
GGCTTGCGGA TGTCCGCGGC GGAGATCGCC GCGCTCGACG ACTGGTTCGC CGCGCAGCGG
ACGCAAGCCA AGCGTCCCCA GCAGGAAGCA GGAGCGCGAT CATGA
|
|---|
| Protein sequence | MGQVFDLAII GGGINGCGIA RDAAGRGNSV FLCEMNDLAS GTSSLSTKLV HGGLRYLEYY
EFHLVREALI EREILWRIAP HIIRPLRFVL PHHAGLRPTW LLRLGLFLYD HIGGRKLLPP
TRSLDLKRDE VGKPLVPGRY RKGFEYSDCF VDDARLVVLT ARDAADRGAD IRTRTRAVET
RQTGGLWHLT VEDTLSGERS TIAARVLVNA GGPWVERVLG LGAGVNTRAR VRLVQGSHIV
VGKLYDHDRA YIFQNSDGRI VFAIPYQDDF TLIGTTDRDY DGDPARVKAS DEEIAYLCAS
VSEYLAKPVK PQDVVWTYAG VRPLYDDGAS EAKAATREYV FELDTPGGTP LLSVYGGKIT
THRRLAEEAL EKLSAYLKGT KAREGWTAKA PLPGGDMAVP AVAALTAALM RDYPYLAPAH
ANRLAHAYGT RAAKVLGAAK SMADLGRGFG GTLTEREVRY LISDEWACTA DDIVWRRSKL
GLRMSAAEIA ALDDWFAAQR TQAKRPQQEA GARS
|
|---|
| |