Gene Nham_1053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_1053 
Symbol 
ID4031659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp1179297 
End bp1181336 
Gene Length2040 bp 
Protein Length679 aa 
Translation table11 
GC content63% 
IMG OID637969551 
ProductSel1-like 
Protein accessionYP_576361 
Protein GI92116632 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTCAT CGCGATCGCT TTTCGAGTGG TTTCGACCGG CTTCCGCATC ATCCCGCGCT 
GCCCCTCTGG CGCATGGAAT GGCTGCATAC GAGCGCCGTC AGTATCTGGA GGCGATCAAG
CTCTGGAAGC TCGCGTCAGA GGCTGGCGAG GCCGAAGCGG GCTATCGAAT AGGAATGCTC
TATGTGAGAG GCGAGGGGGT CGTCAGAAGC GTGCCCGATG CCGTCGTCTG GTATGAGTGG
GCGGCCCGAC TCGGCAACGT CGAAGCCATG TTCCAACTCG GCTTGATCTT TCTACATGGA
GACAAGCCGC TGCTCGGTCC CTGTCGCCAC GAAACGTGGC GCCAGTCCTC CGCCGTTCGG
CTCGGCGACA AAGCGTCAAC TATTCACCAG CTCGTGTTTC CGCATGGAAC AAGCGTTGAG
CGGAATGTCG ACGCTGCTTT CGGTTGGATA GCGGTCGCGG CGGAAAGAGG CAAAGCAGAA
GCACAGACGG TCCTTGGCAA CATGTACTGC GAGGGAGTCG GCTGCGAGAA GGATTTCCGT
GCGGCGCTCG CATGGTATCG GGCCGCGGCC GACCAGAACT GCGCCGCAGC CGAATTCGCG
CTTGGCGACG TCCATTATCA AGGCAAAGGC GTTCCCGTTG ATTTCGAGCA GGCGGCGGTC
TGGTACCGCA AGGCGGCCGA ACAGGATCAT GTCAGGGCGC AGGTTGCGCT TGCGTTCATG
AACCTGAAAG GAACGGGCCT GCCGGAGGAC CCCGCTGAAG CCGCTCGCCT GTTCCAGGGT
GCCGCCAGGC AAGACGATAC GATCGCGCTC TACAACATCG GCCTGTTGCG CTTGAACGGC
CATGGCGTTG CGAAGGATAT CGACCGGGCC GAAACCGCAC TGCGCAAGGC GGCGCGCAAG
GACTACTTTC CGGCAGTCCA GGCGCTGGCG GATTTTTATT CGCACGGCGC AGGCTCCGAG
CCCGATTTGC GGGAGGCCGC GGTCTGGTAC GAGAAGGCCG CCGAGCGGGA CGATGTGCAG
GCGCAGTTTT TCATGGGCCG CTTCTATGCG ACGGGCACCG GCGTCGGTCC GAATATCCGT
CAAGCCGCAA AATGGTTCGA GCGCGCGGCC GGGAATGGTC ATGCGACCGC CGCGTTCAAC
ATCGCCATCT TCTATCTCAA TGGCTCCGGC GTCGAACGCA ATGTGGAAGC CGCAATCGAA
TGGTTCGAGC GCGCATCCGA AAGCGGCATC CGCGCCGCGC AGTTGCAACT CGGGAGGCTT
TATTCGGCGG GCAATGGGGT TCCGCGAGAT CACAAGCGGG CGGGAGAATG GCTCAGCAAG
GCCGCTTCGG GCGGAGAGCC GGACGCCAAG ACGGCCTATG CGTTTTTCCT GCTTCACCAC
GACGATTCGA CCGAGCGGCT TGAACAGGTG CGATCACTGT TGAGCGAGGC GGCTGAAGCC
GGCCACGCGC CGGCTGCATT CCAGCTCGGT GTGTTGGAAA TGGGCAGGTT TGGCGGGAGC
GTGGATGTCG AAGCTGCCGT GTCGTGGTTC TCCCGTGCCG CCGGCGCAGG TCATGTCGAG
GGCCAATACA CTTTGGCGCT TCTGTATCTC GATCCGAACA ACGCCGTGAG CGATGCGAAG
GCAGCGGTAT CCTGGATGAC CAGAGCCGCC CATGCAGGCC ATGCTGGCGC GCAGTTTCAG
CTCGCCGTGA TCTATTGCAC CGGCGCAGGC GTAGCCCAGG ATGTCGCGCA GGGCGCGAAC
TGGTACGAGG CTGCCGCGCG ACAGGGGCAT AAGGTAGCGC AGTTCAACCT CGCGGTGATG
CTTGGAAAAG GACAGGGCTG CGAGGCCGAT CCCGGGAAGG CGGTCGAATG GTTCGAGAAA
GCGGCTGAGC AGGATATGGC GGAAGCGCAG GTTGCGCTCG GCGATGCGTT GATGTCGGGA
AGCGGCGTTG CGCAAGACCG GGACGCGGCG GTGCACTGGT ATCAGCAGGC CGCGCGGCAA
AACCACGAAG GGGCGGTGCG CCGTCTGGAT GCGATCGGCG TGACGCTGGT CGATGGTTGA
 
Protein sequence
MLSSRSLFEW FRPASASSRA APLAHGMAAY ERRQYLEAIK LWKLASEAGE AEAGYRIGML 
YVRGEGVVRS VPDAVVWYEW AARLGNVEAM FQLGLIFLHG DKPLLGPCRH ETWRQSSAVR
LGDKASTIHQ LVFPHGTSVE RNVDAAFGWI AVAAERGKAE AQTVLGNMYC EGVGCEKDFR
AALAWYRAAA DQNCAAAEFA LGDVHYQGKG VPVDFEQAAV WYRKAAEQDH VRAQVALAFM
NLKGTGLPED PAEAARLFQG AARQDDTIAL YNIGLLRLNG HGVAKDIDRA ETALRKAARK
DYFPAVQALA DFYSHGAGSE PDLREAAVWY EKAAERDDVQ AQFFMGRFYA TGTGVGPNIR
QAAKWFERAA GNGHATAAFN IAIFYLNGSG VERNVEAAIE WFERASESGI RAAQLQLGRL
YSAGNGVPRD HKRAGEWLSK AASGGEPDAK TAYAFFLLHH DDSTERLEQV RSLLSEAAEA
GHAPAAFQLG VLEMGRFGGS VDVEAAVSWF SRAAGAGHVE GQYTLALLYL DPNNAVSDAK
AAVSWMTRAA HAGHAGAQFQ LAVIYCTGAG VAQDVAQGAN WYEAAARQGH KVAQFNLAVM
LGKGQGCEAD PGKAVEWFEK AAEQDMAEAQ VALGDALMSG SGVAQDRDAA VHWYQQAARQ
NHEGAVRRLD AIGVTLVDG