| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0993 |
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| Symbol | |
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| ID | 4031753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1098821 |
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| End bp | 1101967 |
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| Gene Length | 3147 bp |
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| Protein Length | 1048 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637969493 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_576303 |
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| Protein GI | 92116574 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.379885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCTCCG GATATTTTAT TGATCGCCCC CGCATGGCGA TCGTCATCGC CATCGTCATT
TCGCTCGCAG GCCTGCTGGC GCTCTCGCGC ATTCCTGTCG CTCAGTTGCC CGACATCGTG
CCGCCGCAGG TTCAGGTCTC GGCGGTCTAT CCGGGCGCCT CTGCCTCGGT GCTGGAAGCG
ACCGTGGCGC AGCCGATCGA GTCCAAGGTC GTGGGCGTCG ACAAGATGAT TTACATGAAG
AGCAGCAGCG GAGCCGATGG AAGTTACAAT CTCACCGTCA GTTTTGCCCT TGGCGCCGAT
CCAGACATCA ACACCGTCAA CGTCAATAAT CGCGTTCAGA CCGCGATGGC GAACCTGCCC
ACCGAAGTGC AGGCCCAGGG ATTGACCGTC CAGAAGCAGT CGTCGTCGCT GCTTCAATTC
ATCGCCCTCT ATAGCGAAGG CGGAAAGCTC GCTCCGCTGT TTATCACCAA TTACGCCATC
ATCAACGTGA TGGACGAGTT ATCGCGGACG CCGGGCGTCG GGCAGGCGAC CCTGTTCGGG
CGCGAAGATT ATTCGATGCG GATCTGGTTC GACACCTCGC GGCTGACGAA CCTGGGCCTC
GCACCGTCTG ACATTATTCG TGCTGTGCAG GCGCAGAACG TCCAGGCGCC GATCGGCCGT
CTTGGCGCAC GCCCGGTTCC TGAAGATCAG CAGTTTCAGT TGAACCTGCA GACCCAGGGG
CGCCTCACGA CCCCGGAGGA ATTCGGTGCC ATCGTCATCC GCGCCAATCC GGACGGTTCG
GTGCTGCAGG TCAAGGACGT CGCCCGTATC GAACTGGGCG CGCAGAACCT GGATACGTTC
AGTCGTCTCA ACGGCAACCC GTCGGTGGCG ATCGGCATCT ATCTCGCGCC CGGCGCCAAT
GCCATCACCG TAGCGAAGAC CGTGAACGCA ACGCTGGAAA AGTTGCGAGG GCGCTTTCCC
GCAGGGCTAC AAGCGCGCGT CGTCTATGAT TCCACGGTTT TCGTGACCGA TACGATCAGC
GCCGTCATTC ACGCCCTTAT CGAGGCATTT GTTCTGGTCG CTATCGTCGT ATTCCTGTTT
CTCGGCAATC TGCGCGCCAC CATTATTCCG ATCATTGCCA TTCCGGTCAG TCTGGTTGGA
AGTTTCTTCG TTCTGCTTGC GCTTGGCTAT TCTGCCAACA CCGTCTCGTT GCTGGCGCTG
GTGCTCGCGG TTGGCATCGT GGTGGACGAT GCGATCGTCG TGGTCGAAAA CGTCGAGCGG
GTGATGGAGG AAGAACCGGA TCTTTCACCT GCGGATGCGA CCAAGAAAGC CATGGCGCAG
GTGACCGCGC CGATCGTCGG CATTACCCTG GTATTGCTAT CCGTGTTTGT TCCGATTGCC
TTCATCTCCG GCATTTCAGG CGAGCTGTTT CGCCAGTTCG CGGTAACGAT AAGTGCCTCG
GTGCTGATTT CGGCGGTCAA TGCGCTGACA CTTTCGCCGG CGCTGTGCAC GGTGTTCCTC
CGTCACTCCC CGCGCCGCGG CATCATGGGG CGTATCGGGT GGGGAATCGA CAAAGTGCGC
GACGGTTATG CCACCATCGT TCGCAAGACA TTACGTTTGT CGATCATTTC AATGGTGCTG
GTCGCCGCAT TCGGTCTGGG TATTTTTGGC CTGATGAAGG TTACCCCTAC GGGCTTCCTG
CCGGAGGAAG ATCAGGGCGC TTTCTTTATC AACGTGCAAC TGCCGGATGG CGCCTCGGTC
AACCGGACCA GCGAAACCGT AAAGCAGGTG GAGAACATTC TGAAGTCGAT GCCGCAGGTG
CAGGATACCA CCGCGATCAT CGGTTATTCG TTGCTCGACA GCTATTCCGC CAGCAACAAT
GCGTTCCTGA TAGCCACCCT GAAGCCATTC GAAGACCGCA CCAAGGTGGC CGATTCCGCG
CAAGCCTTGA TCGCGCATGT CTTCGGGGCA GCCCAGCAGA TACGTACGGC GAACGTATTG
CCGTTCAATC TTCCCCCGGT CGTGGGTCTG TCAACCACAG GCGGGTTCGA ATATCAGCTT
GAAAATCTGG AAGGGGCCGA TCCGAAAGCA ATGGGTGCGG TGGTTCAGGG GCTCGTCGCC
GCGGCCAATC AGGACCCGCG GCTTTCGCGC GTCTTCTCAA CCTACGGCGC CAATGCGCCA
TCCATCTTCC TTGATATTGA TCGCGAGAAG GCGCAGTCGC TCGGCATTAC CCTCAGCGAT
GTTTTCACCA CGTTGCAAGC CACACTGGGG GGGTACTTCA TCAATAATTT CAACCTGTTT
GGTCGCACCT GGCAAGTGAA TTTGCAAGCC GAGGCGGCGG ACCGGCGCGA CGTGTCCGCG
CTCTGGAAGA TATTCATTCG AAATTCAAAA GGTGAGATGG TGCCGCTACA GTCGATTGCA
TCGGCTCGTA CCGTCACCGG GCCGCAAGTG ATCACGCGGT ACAACAATTA CCGCTCGGTG
ACCATCAATG GCGGCCCGGC TCCGGGCGTG GCATCGGGTA CCGCATTGGC CGCCATGGCC
GAGGTGTCGG CCAAGACGCT TCCCCCAGGC TATGCGTTCG AATGGACCGG CACCGCCTAT
CAGGAGCAAG CCGCAAGCGG CCAGACGATA ATCGTGCTGG GCATGGCGTT GCTGTTCGCA
TTCCTGTTTC TGGTCGGGCT CTACGAAAGC TGGGTCATCC CGATTCCGGT GCTGTTCTCC
GTGGTGGTTG GTGTGGTCGG CGCCATCGGC GGCGTTCTGA TCGCGCACCT CACGCTCGAT
CTTTATGCAC AGATTGGGCT CGTCGTTCTG GTTGCGCTGG CGGCGAAGAA CGCCATCCTG
ATCGTCGAGT TTGCCAAGGA ACAGCGTGAG CAAGGGTTGG GCCTTGAACA GGCCGCAGCT
CTCGGCGCCG AGATGCGGTT CCGCGCAGTA TTGATGACAT CGATCGCATT CATCCTCGGG
CTGGTGCCGC TGGTCTGGGC GACCGGCGCA TCGCAGATCG CGCGGCATGC CGTCGGCACG
CCGGTGTTCG TCGGCATGAT CGCTGCGAGC AGTATCGGAC TGTTCTTGAT TCCGATGCTC
TATGTCTTCT GGGAATCGAT CAGAGAGCGA ACAAGTGGAT TCTTCAATCG GAGGAAAACG
GCTGATCCTG ATCCGGCAGA GCGGTAG
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| Protein sequence | MLSGYFIDRP RMAIVIAIVI SLAGLLALSR IPVAQLPDIV PPQVQVSAVY PGASASVLEA
TVAQPIESKV VGVDKMIYMK SSSGADGSYN LTVSFALGAD PDINTVNVNN RVQTAMANLP
TEVQAQGLTV QKQSSSLLQF IALYSEGGKL APLFITNYAI INVMDELSRT PGVGQATLFG
REDYSMRIWF DTSRLTNLGL APSDIIRAVQ AQNVQAPIGR LGARPVPEDQ QFQLNLQTQG
RLTTPEEFGA IVIRANPDGS VLQVKDVARI ELGAQNLDTF SRLNGNPSVA IGIYLAPGAN
AITVAKTVNA TLEKLRGRFP AGLQARVVYD STVFVTDTIS AVIHALIEAF VLVAIVVFLF
LGNLRATIIP IIAIPVSLVG SFFVLLALGY SANTVSLLAL VLAVGIVVDD AIVVVENVER
VMEEEPDLSP ADATKKAMAQ VTAPIVGITL VLLSVFVPIA FISGISGELF RQFAVTISAS
VLISAVNALT LSPALCTVFL RHSPRRGIMG RIGWGIDKVR DGYATIVRKT LRLSIISMVL
VAAFGLGIFG LMKVTPTGFL PEEDQGAFFI NVQLPDGASV NRTSETVKQV ENILKSMPQV
QDTTAIIGYS LLDSYSASNN AFLIATLKPF EDRTKVADSA QALIAHVFGA AQQIRTANVL
PFNLPPVVGL STTGGFEYQL ENLEGADPKA MGAVVQGLVA AANQDPRLSR VFSTYGANAP
SIFLDIDREK AQSLGITLSD VFTTLQATLG GYFINNFNLF GRTWQVNLQA EAADRRDVSA
LWKIFIRNSK GEMVPLQSIA SARTVTGPQV ITRYNNYRSV TINGGPAPGV ASGTALAAMA
EVSAKTLPPG YAFEWTGTAY QEQAASGQTI IVLGMALLFA FLFLVGLYES WVIPIPVLFS
VVVGVVGAIG GVLIAHLTLD LYAQIGLVVL VALAAKNAIL IVEFAKEQRE QGLGLEQAAA
LGAEMRFRAV LMTSIAFILG LVPLVWATGA SQIARHAVGT PVFVGMIAAS SIGLFLIPML
YVFWESIRER TSGFFNRRKT ADPDPAER
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