| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0972 |
|---|
| Symbol | |
|---|
| ID | 4031810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 1074945 |
|---|
| End bp | 1077233 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637969474 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_576284 |
|---|
| Protein GI | 92116555 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.804591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACATG AAGTCGCGGC CAGAAATATT GTACGCATTG TTTCGCTTGG AGCAGTGAGT
TGTCTTTCCC TCTCCTTGGA TTTTCCAAAC GGTAGTCAGA AAGCATTCGC TCAAGCGAGT
TTGCCGCCTA TCACGGTGGT CGCTCCGCCA AACCCAACGG TCCGGCAAGC AAGCCAAAAG
CCTCGAACGT CTGCAGCGCA TACAAGGAGG CGTGTTGCCG TACCAAGTTC GCGGCAGGCA
CAACCAGTTC CCTACCTGAC ACCTTCCACC GCGACGCTGG GCGTGCCGCC CGTTTCCTAT
GCCGGGGGGC AGGTCGCGAC CGGGGCAAGC CTTGGGCTGC TCGGTAATCG CAACGTCTTT
GACACTCCTT TCAGTACGAC GAGCTTTACG GAGAAGCTCA TTCGCGACCA ACAAGCCCGA
ACGCTTCAGG ACGTTGTCAA CAATGATGCG TCTGTGCGCA CCAACGTGCC CGCTTACAGC
GGCATCCAGG GCTTTTTCAT CCGCGGCTTT CCGGTGTTTG CGCAGGACAT CGCCTTCAAT
GGGCTATACG GCGTTGCCGA CTCCTTCAGC CCCGCACTCG AACCGATCGA GCGTGTCGAA
GTGCTACGCG GCCCGAGCAC GATGCTGAGC GGCATGCCGC CTTTCGGCAC GATCGGCGGG
ACCATCAATC TTGTTCCAAA GCGCGCCACG GACCTGCCAC TCACGCGCTT CACAACCGGG
TTTATCTCCA ACGCCCAGAG TTATAACGCA ATTGATGTCG GCCGGCGCTT CGGGCTCAAC
GGCGAGTGGG GAGTACGCTT CAACGGTGCC TACCAGACTG GTCACACCCC GATCGATAAC
CAGAAGCAGG AGTTCGGGGT CGGGGCTCTT GCCATCGACT ACCGCGGCGA TCGTTTGCGA
TTTAGTGCAG ACCTCGGCTA CCAGCAACTG GATTTCAACT CCCCTCTTCG AAACCGATCT
GTTTTGCCGG GCTTTCCCAT CCCCAAGGCG CCCGACTTAC GCATCAATCA ACAACAGCCT
TGGGAATATC GTGACAGCAA TAACAGGTCC GCAGCCCTCC GGGCTGAGTA CGACGTGAGC
GACCAGCTCA CCGTCTATGC CGCGTATGGC CATAGCTTCT TTCATCAGGT CTACTTCGGA
GGGCTGCCAT CGATCTTCAA TGCGCGCGGT GATTACCGCT ACCCGATCCG ATTGACCCCG
TATCAGACCA ATAGCGACAC CGGCGAGGTT GGGCTGCGGG GGCAATTTGA GACGGGTCCG
GTGAAGCACC GGATCGGCGC CACCGTGGTC GGCCTCTGGC AAGGTACTGG TTTGATCAAT
ATTCCGGTCG GATCAACAAT CACTTCAAAT ATCTACAATC CTGTCTACGC CCCGCCGCGC
AGCGATGTCG GCCTGCCCCG TTTTTCGCCG ACCACCGCAG AGCGATTTAA CCGGAGCGTT
GCGATCGCGG ACACGATGTC ATTCCTGGAT GACCGTGTGG AACTCACCAT CGGTGGGCGA
TGGCAAGGCA TCGGGGCAAA GGCCCTTAGC CCGACGATGG GCCTGACAAC TTCGGATGCA
AACAACGAGG CCTTTTCTCC CGGTGCCGGC ATCGTCGTAA AGCCGATCGA GCATCTGTCT
TTGTATGCCA ACTATGTCGA AGGGCTGACA TCGACGGCGC CGCCGATCAA TGCCGTCAAC
CTCAATCAGA ACTTTCCCGC CGCGGTATCG AAGCAGGTGG AGGTCGGAGC AAAATACGAT
TTCGGCTCCA TTGCGGTAAC CGTCGCTGGT TTTGAGATCA AACAGCCAAG CGGCTTCCTC
GATCCGACGA CCATGGTGTT TGCTCTCAAC GGCGAACAAC GCAATCGCGG ACTCGAGGTC
AACGTGCTCG GCGAGCCAAT CCAGGGATTG CGTGTTCTGG GCGGCGTCAG CTTGATTGAA
GGCGTGCTGA CCAAGGCCTC GAACCCCGCA TTCAACGGCA ATACTGCCGT CGGCGTCCCG
GCGGTGCAGT TCAATCTCTA CGGCGAGTAC GACTTGCCAT CCGGGTTGGC GCCAGGCGTG
ACTTTGACGG GACGGGTCAT CCACACGTCA TCGCAATTTT ACGATCAGGC GAACACGCAA
AGCATCCCGG ATTGGACCAC GCTTGATCTC GGCCTTCGCT ATACGACCAC GATCCAGCGG
ACGCCCGTCA CGCTGCGCGC CAATATCCAG AACGTCACCG GCGCCAACTA CTGGGCCACG
ACCGGGCGCG GGATTCTGAG CCCGGGCGCG CCGCGCACGT ATCTGCTTTC AGCGAGTTTC
GATTTCTGA
|
|---|
| Protein sequence | MAHEVAARNI VRIVSLGAVS CLSLSLDFPN GSQKAFAQAS LPPITVVAPP NPTVRQASQK
PRTSAAHTRR RVAVPSSRQA QPVPYLTPST ATLGVPPVSY AGGQVATGAS LGLLGNRNVF
DTPFSTTSFT EKLIRDQQAR TLQDVVNNDA SVRTNVPAYS GIQGFFIRGF PVFAQDIAFN
GLYGVADSFS PALEPIERVE VLRGPSTMLS GMPPFGTIGG TINLVPKRAT DLPLTRFTTG
FISNAQSYNA IDVGRRFGLN GEWGVRFNGA YQTGHTPIDN QKQEFGVGAL AIDYRGDRLR
FSADLGYQQL DFNSPLRNRS VLPGFPIPKA PDLRINQQQP WEYRDSNNRS AALRAEYDVS
DQLTVYAAYG HSFFHQVYFG GLPSIFNARG DYRYPIRLTP YQTNSDTGEV GLRGQFETGP
VKHRIGATVV GLWQGTGLIN IPVGSTITSN IYNPVYAPPR SDVGLPRFSP TTAERFNRSV
AIADTMSFLD DRVELTIGGR WQGIGAKALS PTMGLTTSDA NNEAFSPGAG IVVKPIEHLS
LYANYVEGLT STAPPINAVN LNQNFPAAVS KQVEVGAKYD FGSIAVTVAG FEIKQPSGFL
DPTTMVFALN GEQRNRGLEV NVLGEPIQGL RVLGGVSLIE GVLTKASNPA FNGNTAVGVP
AVQFNLYGEY DLPSGLAPGV TLTGRVIHTS SQFYDQANTQ SIPDWTTLDL GLRYTTTIQR
TPVTLRANIQ NVTGANYWAT TGRGILSPGA PRTYLLSASF DF
|
|---|
| |