Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0960 |
Symbol | |
ID | 4031798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 1063074 |
End bp | 1065662 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637969463 |
Product | peptidase C14, caspase catalytic subunit p20 |
Protein accession | YP_576273 |
Protein GI | 92116544 |
COG category | [R] General function prediction only |
COG ID | [COG4249] Uncharacterized protein containing caspase domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.355322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTGTCT TGGCCTGCAT TGCGCTCGCC CTTATCGCAC TCACGTCGTT ATCTCCAACC AACGCGCAAC AAGCTGAAAA GCGCGTTGCT TTGGTGATCG GTAACGCCGC CTATCAGTCA GAAGCATTGC CGACCACTGC GAACGATGCT GGTCTCATCG CCCAGACACT GCAGGCTGCC GGATTCGATG TGGTCGGCGC GCGCGATCTC GACCAGGACA CGCTGCGCCG TACGTTCCGT GAGTTTCTCG ACAAGGTCAG CGCGTCCGGA CCAGACACCG TCGCCTTCAT CTATCTCGGT GGATATGGCG TACAACTCGA AGGCGAGAAT TACTTCGTAC CGGTCGATGC GAAGCTCGCG CGCGATACCG ATGTGCCGCT CGAAACGCTC CGGCTATCCG ACTATATCCG GCCGCTGGCG GCGCTGAAAA TCAAAGCGGG TATTGTCGTC CTCGATGCCG CGCGCGCCAA TCCGTTCTCC GGATCGGACC AGCCGTTGGC CAGCGGCCTC GCACTGGTGG AGCCCGAACC GCACATGTTG ATCGCCTTCA ATGCGGCTCC CGGCACGGCG GCGCCGCAGG AGAAGGGGCC GTACGGCGCT TATGCGCAGG CGCTCGCCGA AATGATCCGC ACCGGCGGCC TGCCGCTCGC CGATGTGTTC GACCGGACCC GTCTGCGCGT CAATGAAATG ACCAAAGGCG GCGAAGTGCC CTGGAGCGCG TCGAAGATCG AGGCGCCTTT CATGTTCTTC GACCGCGCGC CTGACGCTCC ACCACCGACC GCGTCAAATG AACAAATTGC CACGATGCGC GCGCGACCAA TTCGCGATCT CGACGCGCAG GATGCATATG TCGCCGCGCT GGAACGCGAT ACGCTGCGAG GGTATCTCGA TTTTCTCGCC GCCTATCCGA ACGATCCGAT GGCGAGGCGT GTCCGCGCCA TTGTCGCCGC GCGCCGGGAA GCGATCACCT GGCGGTACAC ACGTAGCGTC GACACGCCAC AGGCCTACTG GTCGTATCTG CGCCGCTATC CGCGCGGACC GCACGTCGCC GACGCCCATC GCCGCCTCGC ATATCTCGCC GCTGCGTTCG AGCCGCCCCC GACTTTCACT GCTATCAGCT ATGACGTCCC GCCACCGCCC GAAGACGAGA TCGTGTATTT CCGTCAGCCG GTGCTGGTCT TTGACGATCC GGACTATGGA TTCGCGCCAC CGCCGCCACC GCCGGTGTTC TTCCTGCCAC CGCCACCACC GGATTTCGTC GTGCTTGCAC CACCGCCACC CGTATTTGCG GCGTTCGTGC TGCCGGTCCC CGATTATGTG CCGATGCCGG CATATTACAG CCCGCCGCCC TATGTGGCGC CGCCGCCGCA GAACGTCATC TATAACAACA TCCACAATAC AGTGGTGATC AACACCACCA CCAACATGGT CACGATCACC AGGCCAGGCG GTCAGCCGCA GACGGTGACG CCGGCGCAGG CGCTTGCGTC GCAACCTGTA TCCGCAACTC CGGCAGCAAC ACCAAGCGCC ACACAGCAAC CTGCCGCGCA GCAGCCTGCT GCGCCTGCAT CGGGCGCGCC TACCACGCCG ACCGCTCCCG GTATCGCAGC TACACCGCCG CACGGCGTAT CTCCCGGCGT CGCTGCCGCC GGAGCGGCCG TCGCTGGCGC CGCTCTCCTC GCACCGGCAT TACCGAAAAC GGTGGCCAAA AAAGCGGCGA TGATCCGGCC GCAGAATCCA TCGGCACCGG CGCAACAATC AAAGTCTCCG GCTCAAGCAG GACAACCCGG GGCCGCACAG TCCGGCCAGC CGAACGCCGG TCGGGGACAG ACAGCACCTG CCTCACTCGA TCATAAGTTG ACATCGCCGC CATTGCCGGG CGGTCCCGGC GGACAGCCGC TGCCTTCCGC GAACGGCAAA CTACCGATCA AGGGCCAGCC ACAACATTCT TTGCACGCGC CGTCAGGCGG CAAGGCAGCT GTGCGACCTC TACCAAGCCC CAGCGGTCAG CCGGGCTCTC CGGTGCAGTC GCCGAAGCGG GACACCGGTG CAGAACCTGT TGCCAGTCCA CCGCAGACCT CGCCATCGCC TGATCATAAG CCGGCCGCAC AACGATTGCA CGGCGCGCCA TCGCTCCCCT CCGTAAATGG CAAGCCACCG GTTCCAGGTC AGCCACACCG TCCGCAAACG CAGCAAGAAA CGCTGTCGCC ACCCGTTGCA TCGCCTGCGC AATCGGGTCG CAAAACTGTC GTCCGGCCGC CAACTAGCCC GCATGGTCAA AGCGATCGAC AGGTTTCACC AGCGCACCCT GCGCGACAAA AGCCTGTTGC CTCACAGCCT CGGACACGAG CCGCGTCGCC GCATATCGCA CGTCCGACAC CGCCGCCCGC TGTACGCTCC GCCCCACGTC CGGTCTCGCG GCCAGCACCT CCGCCGAGGA TGCGGCCGTC GCCGCCACCC CAAATGGCGC GCCCACCTGT TGCGCGTCCT ACGCCACCTC ACGTGACGCG ACCGACCCCA CCACCCAAGG CCCATCCGAC ACCGCAGGCC ACTAAGCCGT GCGTCCACGG ACAACCGTGT AAAAGATAG
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Protein sequence | MRVLACIALA LIALTSLSPT NAQQAEKRVA LVIGNAAYQS EALPTTANDA GLIAQTLQAA GFDVVGARDL DQDTLRRTFR EFLDKVSASG PDTVAFIYLG GYGVQLEGEN YFVPVDAKLA RDTDVPLETL RLSDYIRPLA ALKIKAGIVV LDAARANPFS GSDQPLASGL ALVEPEPHML IAFNAAPGTA APQEKGPYGA YAQALAEMIR TGGLPLADVF DRTRLRVNEM TKGGEVPWSA SKIEAPFMFF DRAPDAPPPT ASNEQIATMR ARPIRDLDAQ DAYVAALERD TLRGYLDFLA AYPNDPMARR VRAIVAARRE AITWRYTRSV DTPQAYWSYL RRYPRGPHVA DAHRRLAYLA AAFEPPPTFT AISYDVPPPP EDEIVYFRQP VLVFDDPDYG FAPPPPPPVF FLPPPPPDFV VLAPPPPVFA AFVLPVPDYV PMPAYYSPPP YVAPPPQNVI YNNIHNTVVI NTTTNMVTIT RPGGQPQTVT PAQALASQPV SATPAATPSA TQQPAAQQPA APASGAPTTP TAPGIAATPP HGVSPGVAAA GAAVAGAALL APALPKTVAK KAAMIRPQNP SAPAQQSKSP AQAGQPGAAQ SGQPNAGRGQ TAPASLDHKL TSPPLPGGPG GQPLPSANGK LPIKGQPQHS LHAPSGGKAA VRPLPSPSGQ PGSPVQSPKR DTGAEPVASP PQTSPSPDHK PAAQRLHGAP SLPSVNGKPP VPGQPHRPQT QQETLSPPVA SPAQSGRKTV VRPPTSPHGQ SDRQVSPAHP ARQKPVASQP RTRAASPHIA RPTPPPAVRS APRPVSRPAP PPRMRPSPPP QMARPPVARP TPPHVTRPTP PPKAHPTPQA TKPCVHGQPC KR
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