| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0628 |
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| Symbol | |
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| ID | 4031285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 688966 |
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| End bp | 690744 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637969159 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_575976 |
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| Protein GI | 92116247 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACATCCA TTTCACCGGC AGCCAATCCC TCGTCCGGCG CAGATGCGTC ACAAGCCGTC
AACGCGCCGG CGGATCGGCC CCAAGCGCCC CAGGTACAAG CGCCCCAAGT ATCGGAGATT
CTTGCCGCGC TCGGTCGGGC CGCGTTCGTC TGGGATATCG CAAGTGATGC CATCACCTGG
ACCGACGAGG CTAGGTCGAT CTTTCAGGAT ATCGATCCGG CCTTGCTTGC AACCGGCGCC
GGGTTCGCCT CCCTGATCGA GCCGTCGGGA TCGATCCGCG CCGACATCTT GCTGGCCACG
CCGCCCGCCC GGCGGCACGG CGAGGGCGTG CCCTATCGCA TCGAATACGG CGTGCGCGCC
AGCGCCTCGG CGCCGATGCT CTGGATCGAG GAGTCCGGCT GCTGGTTCGC CGACGCCGAC
GGCAAGGCGG TGCGCGCCGA GGGTATCGTG CGGCTCGAGA ACGAGCGGCG CGCGCGCGAC
GAGCAGCTCA TCAGGTTGTC GCGGGACGAT GCCTTGACCG GCGAGCTTAA TCGCACGCAT
CTGACGGCGG CGCTTGCCGA GGCGATCGAG GAAGCCGCGC GCTACCGGTC GTCTTTTGCT
TTCATGATGG TCGGGATCGA TCACCTCGCG CGCATCAACG ACGCGTTCGG CTTCGATGTC
GCCGACGAGG TGATCGGCGA TGTCGCCAGG CGTATCCGCG CGCGCTTGCG CAGCGGCGAC
GTGCTCGGTC GTTTCTCCGG CAACAAGTTC GGGGTGATCC TGAAGAATTG CACGGTCGAT
GACATGAGCG TCGCCGCCGA GCGGCTTCTG GCAGGCATTC GCGACGAGAT CGTGCCGACC
AGATCCGGTC CGGTCTCGGT CACCGCCTCG ATCGGCGCGG TCCTTGCCCC GCGTTACGCG
CGCAACGCCG ATGAAGCGAT CAACCGTGCC CAGGAAATTC TCGAGGCCGC GAAAAGTCGC
CGCAGCGGCT CGTTCGCGGT GTGGCGGCCG AGCGTCGAGC GCGACGCGCA GCGCCGGATC
AACATCCGGG TCACCGACGA AATCGTCACC GCGCTGAACG AGCGCCGCAT CGTCACCGCC
TTCGAGCCGG TGGTCGATGC ACGCACGCGC GAACCGGCGT TCTACGAGTG CCTGGTGCGG
ATGCATCAGC AGGACGGCCA GGTCCTGCTC GCGCCCGATG TCGTGCCGGT GGCGGAGAAG
CTCGGCCTGA TCCGCCTGGT CGATCATCGC GTGCTTGAGC TTGTCATCGC CGAGTTGGCG
GAAGCGCCCG GCGTTCGGCT CAGCCTCAAT ATCTCGCCGG AGACCACCAT GGATGCCGAC
TGGTGGGCGG CGATCGAATC ATTGATGGGC GCGCATCCCG GCGTTGCCGA ACGCCTGATC
GTCGAGATCA CCGAAACGGT GGCGATTCAG GATATCGACG ACGTCAGGGA ATTCGTCACG
CGGCTGAAGA CCTTCGGCAG CCGGATCGCG ATCGACGATT TCGGCGCCGG CTACACCTCG
TTCCGGAATC TGCGCAAGCT TGGCGTAGAC ATCGTCAAGA TCGACGGCGC GTTCGTGCAG
AACCTCGCGC GCTCCTCCGA CGACCGGGCT TTCGTGCAGA CGCTGATCGA TCTGGCGCGT
CGGCTCGATA TCAGGACGGT GGCCGAGTGG GTTCAGGACG AGCAATCCGC CGTCATGCTG
CGTGACTGGG GCTGCGACTA CATCCAGGGG CGGCTGATCG GTCTTGCCTC GCCGGAACGG
CCGTGGAGCG GCCCGGAGGC CATTCCCGCC GCGAGATGA
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| Protein sequence | MTSISPAANP SSGADASQAV NAPADRPQAP QVQAPQVSEI LAALGRAAFV WDIASDAITW
TDEARSIFQD IDPALLATGA GFASLIEPSG SIRADILLAT PPARRHGEGV PYRIEYGVRA
SASAPMLWIE ESGCWFADAD GKAVRAEGIV RLENERRARD EQLIRLSRDD ALTGELNRTH
LTAALAEAIE EAARYRSSFA FMMVGIDHLA RINDAFGFDV ADEVIGDVAR RIRARLRSGD
VLGRFSGNKF GVILKNCTVD DMSVAAERLL AGIRDEIVPT RSGPVSVTAS IGAVLAPRYA
RNADEAINRA QEILEAAKSR RSGSFAVWRP SVERDAQRRI NIRVTDEIVT ALNERRIVTA
FEPVVDARTR EPAFYECLVR MHQQDGQVLL APDVVPVAEK LGLIRLVDHR VLELVIAELA
EAPGVRLSLN ISPETTMDAD WWAAIESLMG AHPGVAERLI VEITETVAIQ DIDDVREFVT
RLKTFGSRIA IDDFGAGYTS FRNLRKLGVD IVKIDGAFVQ NLARSSDDRA FVQTLIDLAR
RLDIRTVAEW VQDEQSAVML RDWGCDYIQG RLIGLASPER PWSGPEAIPA AR
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